Orthogroup:group_1292


Homologs in group_1292

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_07865 FBDBKF_07865 Morganella morganii S1 lys9 diaminopimelate dehydrogenase
EHELCC_13695 EHELCC_13695 Morganella morganii S2 lys9 diaminopimelate dehydrogenase
NLDBIP_14140 NLDBIP_14140 Morganella morganii S4 lys9 diaminopimelate dehydrogenase
LHKJJB_08710 LHKJJB_08710 Morganella morganii S3 lys9 diaminopimelate dehydrogenase
HKOGLL_08260 HKOGLL_08260 Morganella morganii S5 lys9 diaminopimelate dehydrogenase
F4V73_RS13155 F4V73_RS13155 Morganella psychrotolerans - diaminopimelate dehydrogenase
PMI_RS00725 PMI_RS00725 Proteus mirabilis HI4320 - diaminopimelate dehydrogenase

Distribution of group_1292 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1292 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1292

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1292.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 lys9 5
2 - 2

Product

# Product Occurence
1 diaminopimelate dehydrogenase 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0673 6 R General function prediction only (R) Predicted dehydrogenase
COG3804 1 S Function unknown (S) Uncharacterized conserved protein

Kegg Ortholog Annotation(s)

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01408 7 Oxidoreductase family, NAD-binding Rossmann fold
PF16654 7 Diaminopimelic acid dehydrogenase C-terminal domain

Annotations of the 6 SwissProt hits

Annotation Number of occurrences
Meso-diaminopimelate D-dehydrogenase 5
Redox-sensing transcriptional repressor Rex 1

Protein length

Min length 297
Max length 319
Mean length (sd) 313.0 (10.3)
Median length 319.0

Protein length distribution