Homologs in group_19

Help

18 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07880 FBDBKF_07880 47.8 Morganella morganii S1 mtr tryptophan permease
FBDBKF_11130 FBDBKF_11130 100.0 Morganella morganii S1 sdaC Amino acid permease
FBDBKF_14845 FBDBKF_14845 42.4 Morganella morganii S1 mtr tryptophan permease
EHELCC_05095 EHELCC_05095 100.0 Morganella morganii S2 sdaC Amino acid permease
EHELCC_13710 EHELCC_13710 47.8 Morganella morganii S2 mtr tryptophan permease
EHELCC_15650 EHELCC_15650 42.4 Morganella morganii S2 mtr tryptophan permease
NLDBIP_14155 NLDBIP_14155 47.8 Morganella morganii S4 mtr tryptophan permease
NLDBIP_16180 NLDBIP_16180 42.4 Morganella morganii S4 mtr tryptophan permease
LHKJJB_02295 LHKJJB_02295 100.0 Morganella morganii S3 sdaC Amino acid permease
LHKJJB_08695 LHKJJB_08695 47.8 Morganella morganii S3 mtr tryptophan permease
LHKJJB_15660 LHKJJB_15660 42.4 Morganella morganii S3 mtr tryptophan permease
HKOGLL_08245 HKOGLL_08245 47.8 Morganella morganii S5 mtr tryptophan permease
HKOGLL_14780 HKOGLL_14780 42.4 Morganella morganii S5 mtr tryptophan permease
HKOGLL_15675 HKOGLL_15675 100.0 Morganella morganii S5 sdaC Amino acid permease
F4V73_RS07645 F4V73_RS07645 42.2 Morganella psychrotolerans mtr tryptophan permease
F4V73_RS08145 F4V73_RS08145 92.6 Morganella psychrotolerans - aromatic amino acid transporter
F4V73_RS13140 F4V73_RS13140 47.8 Morganella psychrotolerans mtr tryptophan permease
PMI_RS04105 PMI_RS04105 41.4 Proteus mirabilis HI4320 mtr tryptophan permease

Distribution of the homologs in the orthogroup group_19

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_19

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q47825 0.0 627 75 1 414 3 tutB Tyrosine permease Enterobacter agglomerans
Q02DS7 1.64e-121 362 45 4 423 1 mtr Tryptophan-specific transport protein Pseudomonas aeruginosa (strain UCBPP-PA14)
P0AAD3 1.55e-119 357 48 4 415 3 mtr Tryptophan-specific transport protein Shigella flexneri
P0AAD2 1.55e-119 357 48 4 415 1 mtr Tryptophan-specific transport protein Escherichia coli (strain K12)
P23173 2.12e-108 328 43 3 405 1 tnaB Low affinity tryptophan permease Escherichia coli (strain K12)
Q8XB33 1.4e-107 326 43 3 405 3 tnaB Low affinity tryptophan permease Escherichia coli O157:H7
P44614 1.95e-105 321 42 5 420 3 mtr Tryptophan-specific transport protein Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P28785 3.22e-79 253 36 4 382 2 tnaB Low affinity tryptophan permease Proteus vulgaris
P0AAD5 3.81e-58 198 32 5 406 3 tyrP Tyrosine-specific transport system Shigella flexneri
P0AAD4 3.81e-58 198 32 5 406 1 tyrP Tyrosine-specific transport system Escherichia coli (strain K12)
P44727 1.63e-37 143 29 9 401 3 tyrP-A Tyrosine-specific transport system 1 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P44747 1.07e-30 125 28 9 411 3 tyrP-B Tyrosine-specific transport system 2 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q5E5M9 1.42e-14 78 22 7 368 3 VF_1172 Glutamine transporter 2 Aliivibrio fischeri (strain ATCC 700601 / ES114)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_05415
Feature type CDS
Gene sdaC
Product Amino acid permease
Location 48559 - 49827 (strand: 1)
Length 1269 (nucleotides) / 422 (amino acids)

Contig

Accession ZDB_521
Length 325332 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_19
Orthogroup size 19
N. genomes 7

Actions

Genomic region

Domains

PF03222 Tryptophan/tyrosine permease family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0814 Amino acid transport and metabolism (E) E Amino acid permease

Protein Sequence

MSIHSADTNKSPGLTSGTMLVIATVVGGGMFSLPIAMAGVWFSGATVILILVAIMMLLTGLMLVEVNLHFEPGASFNTFTTELLGKKWNIVVGIAFGFVLYILTYAYISGSSAVLTQTILKYTGVALPIKAAVVIVACLVAAIVWYSSLWVGRITTILIFGKFIAFFATFSGLVAHVEIANLLDSASVAIPGTKYLPYVLMTLPFCIISFGFHGNVPSLVKLYGKTKFRFITRSIIIGTIFAVLLYIFWLGVTMGNISRANFSPIIAKGGNIDVFVEAIGGVMSGKTMDLILTFFGNFAVASSLLAATLGLFDYIADLLNFKNDSAGRFKTAVVTYLPPAVVCFFFPNGFVYAIGYAGLAFTIWSVILPPFLVKASRKRYSDSDTIYRSPCNSAVLNLVIVCGAIVYLTVILDVFGWLPAFK

Flanking regions ( +/- flanking 50bp)

TAAATATGAATGCTGTTGGTGATATTTATCATTAATAGGAAACTTTTATTATGAGTATTCATAGTGCCGATACAAATAAATCACCCGGACTGACCAGCGGAACCATGCTTGTTATAGCAACAGTCGTTGGCGGCGGTATGTTTTCTTTGCCGATTGCGATGGCCGGTGTCTGGTTTTCCGGTGCCACCGTTATTTTGATTTTAGTTGCAATTATGATGTTACTGACCGGTCTGATGTTAGTTGAAGTTAACCTGCATTTTGAACCGGGCGCCAGCTTTAATACCTTCACCACCGAGTTACTGGGCAAAAAATGGAATATTGTCGTGGGTATTGCCTTCGGGTTTGTACTCTATATTCTGACGTATGCCTATATCTCCGGGTCATCCGCTGTTCTGACTCAGACGATATTAAAATATACCGGTGTCGCCCTGCCGATAAAAGCCGCGGTCGTGATTGTCGCCTGTCTGGTGGCTGCGATTGTCTGGTACAGCTCATTATGGGTCGGACGTATTACCACCATTTTAATTTTCGGTAAGTTTATCGCGTTCTTTGCCACCTTCTCCGGACTGGTTGCACACGTGGAAATTGCCAATCTGCTGGATTCCGCATCAGTGGCAATACCCGGAACGAAATATCTGCCTTATGTTCTGATGACACTGCCGTTCTGTATTATTTCGTTTGGTTTCCACGGTAACGTGCCGAGCCTGGTGAAGTTGTACGGCAAAACCAAATTCCGCTTTATTACCCGTTCAATTATTATCGGGACAATATTTGCGGTACTGCTGTATATCTTCTGGCTGGGTGTCACGATGGGCAATATCAGCCGCGCCAACTTCTCTCCGATTATTGCCAAAGGCGGGAACATTGATGTGTTCGTTGAGGCTATCGGCGGAGTGATGTCAGGGAAAACCATGGATCTTATCCTGACATTCTTCGGTAACTTTGCGGTGGCCAGTTCCCTGCTGGCAGCAACACTCGGCCTGTTTGACTATATTGCCGACCTGCTGAACTTTAAAAATGACAGCGCCGGTCGTTTCAAAACAGCAGTAGTGACGTATCTGCCACCGGCGGTGGTGTGTTTCTTCTTCCCGAACGGATTCGTTTATGCCATCGGTTATGCCGGTCTGGCCTTTACTATCTGGAGTGTGATTTTACCGCCGTTCCTGGTAAAAGCCTCCCGCAAACGCTACAGCGACAGCGATACCATTTACCGTTCGCCGTGTAACAGCGCGGTACTGAATCTGGTGATTGTCTGCGGTGCGATTGTGTATCTGACGGTCATTCTGGATGTGTTCGGCTGGCTGCCGGCATTTAAATAAGCGGTTACAGACGGCCGGAGGCAAATCATGCTCCGGCCGCTTGTGCAGCG