Homologs in group_6

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21 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_20025 FBDBKF_20025 100.0 Morganella morganii S1 - fimbrial biogenesis usher protein
FBDBKF_20055 FBDBKF_20055 46.3 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
EHELCC_03475 EHELCC_03475 46.3 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
EHELCC_03505 EHELCC_03505 100.0 Morganella morganii S2 - fimbrial biogenesis usher protein
NLDBIP_03475 NLDBIP_03475 46.3 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
LHKJJB_09305 LHKJJB_09305 46.3 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
LHKJJB_09335 LHKJJB_09335 100.0 Morganella morganii S3 - fimbrial biogenesis usher protein
HKOGLL_09640 HKOGLL_09640 100.0 Morganella morganii S5 - fimbrial biogenesis usher protein
HKOGLL_09670 HKOGLL_09670 46.3 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
F4V73_RS00860 F4V73_RS00860 28.8 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS01045 F4V73_RS01045 48.2 Morganella psychrotolerans - fimbrial biogenesis usher protein
F4V73_RS01675 F4V73_RS01675 47.5 Morganella psychrotolerans fimD outer membrane usher protein FimD
F4V73_RS01860 F4V73_RS01860 34.5 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS06000 F4V73_RS06000 18.6 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS07390 F4V73_RS07390 30.1 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS08460 F4V73_RS08460 36.7 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS09375 F4V73_RS09375 30.2 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10255 F4V73_RS10255 37.1 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10900 F4V73_RS10900 42.6 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS12580 F4V73_RS12580 24.5 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS13320 F4V73_RS13320 34.0 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein

Distribution of the homologs in the orthogroup group_6

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_6

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P30130 0.0 835 48 9 869 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P37924 0.0 835 47 10 884 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P77468 0.0 815 48 10 848 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
Q8XDD1 0.0 770 45 13 877 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P75857 0.0 769 46 13 877 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
P46009 0.0 760 44 14 876 3 focD Outer membrane usher protein FocD Escherichia coli
P43662 0.0 677 43 14 848 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P42915 0.0 553 37 20 874 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P53517 7.18e-151 468 33 20 872 3 afaC Outer membrane usher protein AfaC Escherichia coli
P33408 9.15e-147 457 33 17 823 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
Q56983 7.61e-144 449 33 21 882 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 7.61e-144 449 33 21 882 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P46005 8.76e-139 436 33 20 871 3 aggC Outer membrane usher protein AggC Escherichia coli
P26949 5.14e-137 431 32 15 825 1 caf1A F1 capsule-anchoring protein Yersinia pestis
Q8X5K8 2.07e-132 408 42 6 518 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P33129 1.32e-119 386 31 25 874 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P33388 1.05e-118 382 31 18 828 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P45997 2.26e-117 380 30 20 882 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45998 1.3e-116 378 29 21 884 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33397 1.98e-116 377 30 20 882 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33341 1.17e-113 370 29 16 847 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P33410 6.36e-104 345 30 18 829 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P21647 2.41e-102 340 29 24 835 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
Q7DBJ9 6.39e-100 319 43 3 370 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P76137 4.37e-96 309 43 3 370 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)
P46000 6.59e-93 314 29 21 861 3 fasD Outer membrane usher protein FasD Escherichia coli
P15484 1.32e-89 307 30 18 753 3 None Outer membrane usher protein CS3-2 Escherichia coli
P53512 2.28e-84 291 27 20 810 3 cssD Outer membrane usher protein CssD Escherichia coli
Q8X5K7 4.68e-84 276 44 7 342 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
P53513 3.43e-82 284 26 20 810 3 cssD Outer membrane usher protein CssD Escherichia coli
P07110 1.53e-81 283 29 28 870 1 papC Outer membrane usher protein PapC Escherichia coli
P53514 7.37e-81 281 27 26 881 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P77196 2.22e-80 281 28 24 848 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P76655 3.13e-80 279 27 29 860 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P75750 1.29e-78 275 27 24 844 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P37868 1.62e-64 235 26 25 796 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P12050 7.39e-51 195 25 26 792 3 fanD Outer membrane usher protein FanD Escherichia coli
P45420 1.22e-37 155 25 31 813 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)
P06970 2.4e-05 52 29 3 142 3 faeD Outer membrane usher protein FaeD Escherichia coli

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_03505
Feature type CDS
Gene -
Product fimbrial biogenesis usher protein
Location 8987 - 11620 (strand: -1)
Length 2634 (nucleotides) / 877 (amino acids)

Contig

Accession ZDB_520
Length 336657 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_6
Orthogroup size 22
N. genomes 6

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07347 outer membrane usher protein Two-component system
Pertussis		 -

Protein Sequence

MQKLTLLKGLPCFKFNKIMLMLSCAMITGNMVIIKNGYADEFFNPAFLSDNGNEVADLSRFDKGLGQAAGEYRVEVFLNGEYVATQDILFVSNEKEDEIKPGTDDSGLIPCLTTDWLKKYNIDTSKAVLLNDSCVDFRSTYDKSQARFDFEEQKLRVDIPQAAFINNIRGYIPPSEWQDGINALLLNYGFTGSHSKNTKNDERYNNYFLNLDSGINLGAWQLRNTSTWNYTSDRRTDNSQWNNIRTYVQKAIVPLKSQLTIGDSFTENDIFDSVGFRGIKLASDDNMLPDSMRGFAPTVRGVANSNAQVTIRQNGYVIYQSYVSPGAFEIKDLYATSSSGNLDVTVKENNGTITQFTVPYSAVPMLQREGRTKYEVTAGEYRSGSSMQNSPDFWQGTISHGFSEGVTVYGGTQLSDNYRAFSAGAGKNLGVWGAISADITQANSRLPNGEHKQGQSVRFLYAKSLNELGTNFQLMGYRYSTKGYYTLSETSYKQMSGYNIKTQDGPEFKDAEIIDYHNLYYTKKGQYQINISQQFDGYGSVYITGSHQTYWGTSESDQSFQLGFNGNWEDITYGVNWSQNKSVGLADKDKRIALNISVPLSRWFGGGDAADITGSRNNIYSTYTLTRDDKNKVSQQLGISGTLLEDNNLNYNVQQGYANKGEGASGSASVNYQGGYGEAGAGYNYGRNWQQVTYTVRGGVLAHQNGITLSQPLGQTNILVEAPGVKDTSVENATGVFTDWRGYAVIPNATAYRNNRVALDVTTLPDNAELDNAVDYVVPVQGAIVKANFKSRIGLKAMVTLLQKNGKVVPFGAIVTDEHTGKANIVGDDGVAFMTGLPEKGKLNIAWGNSADSQCTAEYHLTAGNNTPISNISARCL

Flanking regions ( +/- flanking 50bp)

CGTTAATTCATATTAACTACTGTTATCTTATTTTATACGGAGCGCATTTTATGCAGAAATTAACTCTGCTGAAAGGATTGCCATGCTTTAAATTTAACAAGATAATGTTAATGCTTTCATGTGCAATGATAACCGGCAACATGGTCATTATTAAGAACGGCTATGCAGATGAATTTTTTAACCCTGCATTTTTGTCAGATAACGGTAATGAAGTTGCTGATTTAAGCCGGTTTGATAAGGGGCTGGGACAGGCTGCGGGTGAATACCGGGTTGAAGTTTTTCTTAACGGGGAGTATGTGGCAACACAGGATATCCTATTTGTCAGCAATGAAAAAGAGGACGAAATAAAACCGGGCACAGATGATAGCGGTTTAATTCCCTGCTTAACCACGGACTGGTTAAAAAAATACAATATTGATACCAGTAAAGCCGTATTACTGAATGACAGCTGTGTGGATTTTCGTTCAACTTACGACAAATCACAGGCCCGTTTTGATTTTGAAGAACAGAAGTTGCGTGTGGATATTCCGCAGGCTGCATTTATCAATAATATCAGAGGGTATATTCCGCCGTCAGAATGGCAGGACGGAATCAACGCCCTGTTACTGAACTATGGTTTTACCGGCAGTCACAGTAAAAACACCAAAAATGATGAACGATATAATAACTATTTTTTAAACCTGGACAGCGGTATTAATCTCGGCGCGTGGCAGCTGAGAAATACCAGTACCTGGAATTACACATCTGACCGGCGCACCGATAACAGTCAGTGGAATAATATCCGTACTTATGTGCAGAAAGCGATCGTTCCGCTGAAAAGTCAGCTGACCATCGGTGACAGTTTTACGGAAAATGACATTTTCGACAGTGTGGGATTCAGGGGGATAAAACTCGCTTCTGACGATAATATGCTGCCGGACAGTATGCGCGGCTTTGCGCCGACTGTCAGAGGCGTTGCCAACAGCAATGCTCAGGTCACTATCCGTCAGAACGGCTATGTTATTTATCAGTCTTATGTTTCCCCCGGCGCATTTGAAATTAAAGATCTGTATGCAACGTCCAGCAGCGGTAATTTGGATGTCACGGTTAAAGAAAATAACGGCACGATCACACAGTTTACGGTTCCGTATTCTGCGGTACCGATGTTACAGCGTGAAGGCCGGACAAAATATGAAGTAACCGCAGGGGAATACCGTTCCGGTTCATCCATGCAAAATAGCCCGGATTTCTGGCAGGGAACTATCAGCCACGGTTTTTCAGAAGGTGTGACGGTATATGGCGGAACACAGTTATCGGATAACTACCGGGCATTTTCTGCCGGTGCCGGGAAAAACCTCGGTGTATGGGGGGCGATCTCAGCGGATATTACACAGGCCAACAGCCGCTTACCCAATGGTGAGCATAAACAGGGGCAATCTGTCCGGTTTTTATATGCCAAATCACTGAACGAACTGGGAACAAACTTTCAGTTGATGGGATACCGTTATTCCACCAAAGGGTATTACACATTAAGCGAAACCAGTTATAAACAGATGAGCGGCTATAATATCAAAACCCAGGATGGCCCTGAGTTTAAAGACGCAGAAATTATTGATTATCATAACCTTTATTATACCAAAAAGGGACAGTATCAGATCAATATCAGCCAGCAGTTTGATGGTTACGGCTCTGTATATATTACCGGCAGTCATCAGACTTACTGGGGAACCAGTGAAAGTGATCAGTCATTTCAGCTTGGTTTTAACGGCAACTGGGAAGATATCACCTATGGCGTGAACTGGTCACAAAATAAATCGGTCGGACTGGCAGATAAAGATAAGCGGATTGCCCTTAATATTTCGGTGCCGCTGAGTCGCTGGTTCGGTGGCGGGGATGCTGCGGATATTACCGGATCCCGGAATAACATTTATTCCACGTATACGCTGACAAGGGATGATAAGAATAAAGTCTCTCAGCAGCTCGGGATATCAGGAACGTTACTTGAGGATAATAACCTTAATTATAATGTTCAGCAGGGATATGCCAATAAAGGTGAAGGGGCATCCGGCAGTGCATCGGTTAATTATCAGGGCGGATACGGCGAGGCTGGTGCTGGTTATAACTACGGCAGAAACTGGCAGCAGGTGACTTATACGGTCCGCGGCGGTGTTCTGGCACATCAGAATGGTATTACATTAAGTCAGCCGCTCGGCCAGACCAATATATTGGTTGAAGCACCGGGTGTTAAAGATACCTCTGTTGAAAATGCAACCGGTGTTTTCACCGACTGGCGCGGTTATGCCGTTATTCCGAATGCCACCGCTTACCGGAATAACCGGGTTGCACTGGATGTCACCACATTACCGGATAATGCCGAACTGGATAATGCCGTGGATTATGTGGTTCCGGTACAGGGCGCTATTGTTAAGGCGAATTTTAAATCCCGTATCGGTCTGAAAGCCATGGTGACACTGTTACAGAAAAACGGAAAAGTGGTGCCGTTCGGGGCAATAGTTACCGATGAGCATACCGGTAAAGCAAATATTGTCGGTGACGATGGTGTCGCATTTATGACAGGTCTGCCGGAAAAAGGAAAACTGAATATTGCCTGGGGAAATAGTGCAGATTCACAATGCACGGCTGAATATCATTTAACGGCCGGAAATAATACCCCGATCAGTAATATCAGTGCCCGCTGTTTATAACACGAATCAGGTAAAGTGAGTTTTAATTATGCGTAATATTATATTATCAG