Homologs in group_841

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04250 FBDBKF_04250 100.0 Morganella morganii S1 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD
EHELCC_05540 EHELCC_05540 100.0 Morganella morganii S2 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD
NLDBIP_05860 NLDBIP_05860 100.0 Morganella morganii S4 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD
LHKJJB_02740 LHKJJB_02740 100.0 Morganella morganii S3 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD
F4V73_RS08695 F4V73_RS08695 83.9 Morganella psychrotolerans ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD
PMI_RS10095 PMI_RS10095 68.9 Proteus mirabilis HI4320 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD

Distribution of the homologs in the orthogroup group_841

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_841

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P82973 1.45e-92 270 69 0 179 3 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Enterobacter cloacae
E1W818 1.28e-90 265 72 0 170 3 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Salmonella typhimurium (strain SL1344)
P13016 2.44e-90 265 70 0 175 1 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Escherichia coli (strain K12)
P82974 3.83e-90 264 66 0 181 1 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Citrobacter freundii
P0CL03 6.14e-90 264 71 0 170 3 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P44624 4.62e-75 226 59 1 179 3 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P75820 2.69e-16 77 37 3 126 1 amiD N-acetylmuramoyl-L-alanine amidase AmiD Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_06215
Feature type CDS
Gene ampD
Product 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD
Location 38492 - 39052 (strand: -1)
Length 561 (nucleotides) / 186 (amino acids)

Contig

Accession ZDB_683
Length 224720 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_841
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01510 N-acetylmuramoyl-L-alanine amidase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3023 Cell wall/membrane/envelope biogenesis (M) M N-acetyl-anhydromuramyl-L-alanine amidase AmpD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03806 N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28] - -

Protein Sequence

MDIQDGWLTTARRVISPHHDTRPEQVTPRLLVIHNISLPPGQFGGPYIDQLFQGTLDPDAHPFFAEIQALRVSAHCLIRRTGEIVQYVPFDARAWHAGISCYQGTEKCNDFSVGIELEGTDTRPFTDEQYRALTAVTQVLLAHYPQIKGHITGHSDIAPGRKTDPGPCFDWNRYRNSLNPADVPAE

Flanking regions ( +/- flanking 50bp)

AATGATATTTATTATGTGATTGAATAACGGTTTTTTGCTCAGGAGAACGAATGGATATTCAGGATGGCTGGCTGACCACAGCGCGCCGGGTGATTTCACCGCATCACGATACCCGGCCGGAACAGGTGACTCCCCGTTTACTGGTGATCCACAATATCAGTCTGCCGCCGGGACAGTTCGGTGGCCCGTATATTGACCAGCTTTTTCAGGGCACGCTGGACCCAGATGCGCATCCGTTTTTTGCTGAAATACAGGCGCTGCGGGTTTCCGCACATTGCCTGATCCGCCGGACCGGGGAAATTGTGCAGTATGTTCCTTTTGATGCACGGGCCTGGCATGCGGGGATTTCCTGTTATCAGGGCACAGAAAAGTGTAATGATTTTTCCGTCGGTATTGAGCTGGAAGGCACGGATACCCGACCTTTTACGGATGAACAGTACCGCGCACTGACTGCGGTGACACAGGTGCTTCTGGCACACTATCCGCAAATAAAAGGGCATATCACCGGACACAGTGATATTGCGCCGGGGCGCAAAACGGATCCCGGTCCCTGTTTCGACTGGAACCGATACAGGAATTCACTGAATCCGGCAGACGTTCCGGCTGAATAATCAGTAAAATTTCGCAGATATGACTGACGTGAAATTTTCCTGTTTACCGG