COG3023


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3023, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 16 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description N-acetyl-anhydromuramyl-L-alanine amidase AmpD
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG3023 is associated with 16 different proteins (see tab "Protein list" and "Profile")
The 16 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_841 FBDBKF_04250 38582 39142 -1 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Morganella morganii S1
1 group_2178 FBDBKF_16395 3550 4377 1 ampD N-acetyl-anhydromuramyl-L-alanine amidase AmpD Morganella morganii S1
2 group_841 EHELCC_05540 98039 98599 -1 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Morganella morganii S2
3 group_2178 EHELCC_08260 120536 121363 1 ampD N-acetyl-anhydromuramyl-L-alanine amidase AmpD Morganella morganii S2
4 group_841 NLDBIP_05860 139104 139664 -1 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Morganella morganii S4
5 group_2178 NLDBIP_08585 120536 121363 1 ampD N-acetyl-anhydromuramyl-L-alanine amidase AmpD Morganella morganii S4
6 group_841 LHKJJB_02740 116628 117188 -1 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Morganella morganii S3
7 group_2178 LHKJJB_05680 135796 136623 -1 ampD N-acetyl-anhydromuramyl-L-alanine amidase AmpD Morganella morganii S3
8 group_2178 HKOGLL_05235 105127 105954 1 ampD N-acetyl-anhydromuramyl-L-alanine amidase AmpD Morganella morganii S5
9 group_841 HKOGLL_06215 38492 39052 -1 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Morganella morganii S5
10 group_2178 F4V73_RS02920 620050 620883 1 N-acetylmuramoyl-L-alanine amidase Morganella psychrotolerans
11 group_3842 F4V73_RS08505 1757171 1757779 1 peptidoglycan recognition family protein Morganella psychrotolerans
12 group_841 F4V73_RS08695 1799631 1800203 -1 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Morganella psychrotolerans
13 group_3842 F4V73_RS08950 1858362 1858994 1 peptidoglycan recognition family protein Morganella psychrotolerans
14 group_2178 PMI_RS07810 1710032 1710916 -1 N-acetylmuramoyl-L-alanine amidase Proteus mirabilis HI4320
15 group_841 PMI_RS10095 2206592 2207134 -1 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Proteus mirabilis HI4320