Homologs in group_841

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04250 FBDBKF_04250 68.9 Morganella morganii S1 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD
EHELCC_05540 EHELCC_05540 68.9 Morganella morganii S2 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD
NLDBIP_05860 NLDBIP_05860 68.9 Morganella morganii S4 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD
LHKJJB_02740 LHKJJB_02740 68.9 Morganella morganii S3 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD
HKOGLL_06215 HKOGLL_06215 68.9 Morganella morganii S5 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD
F4V73_RS08695 F4V73_RS08695 68.9 Morganella psychrotolerans ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD

Distribution of the homologs in the orthogroup group_841

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_841

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P13016 1.26e-92 270 67 0 180 1 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Escherichia coli (strain K12)
E1W818 1.39e-90 265 68 0 179 3 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Salmonella typhimurium (strain SL1344)
P0CL03 6.37e-90 263 67 0 179 3 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P82973 1.58e-89 262 66 0 178 3 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Enterobacter cloacae
P82974 2.01e-88 259 66 0 178 1 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Citrobacter freundii
P44624 2.73e-64 198 54 1 174 3 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P75820 8.09e-18 81 36 3 147 1 amiD N-acetylmuramoyl-L-alanine amidase AmiD Escherichia coli (strain K12)
Q92IC3 6.77e-08 54 26 5 172 3 RC0497 Putative N-acetylmuramoyl-L-alanine amidase RC0497 Rickettsia conorii (strain ATCC VR-613 / Malish 7)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS10095
Feature type CDS
Gene ampD
Product 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD
Location 2206592 - 2207134 (strand: -1)
Length 543 (nucleotides) / 180 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_841
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF01510 N-acetylmuramoyl-L-alanine amidase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3023 Cell wall/membrane/envelope biogenesis (M) M N-acetyl-anhydromuramyl-L-alanine amidase AmpD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03806 N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28] - -

Protein Sequence

MEIKQGWLTGVKHVPSPNYDNRPEGEIPSLLIIHNISLPPGQFGGPYIDQLFTNTLAVDDHPFFNEIAHLRVSAHCLIRRDGEIVQYVPFTARAWHAGVSFYKGREKCNDFSIGIELEGTDECDFTPQQYQQLSTLTQQLIEHYPGIKENITGHSDVAPGRKTDPGPHFNWSYYRALLAK

Flanking regions ( +/- flanking 50bp)

TTAATAAAAATAGCTAATATGATTTTAAATGTAGAAAAAAGAGGGGTGTTGTGGAGATTAAGCAAGGCTGGCTAACGGGAGTAAAGCACGTTCCATCGCCAAATTATGACAATAGACCTGAAGGTGAAATCCCTTCATTGTTGATTATCCACAATATCAGTCTTCCTCCTGGGCAATTTGGTGGACCTTATATTGATCAACTGTTTACCAATACGCTTGCTGTTGATGATCATCCTTTTTTTAATGAGATTGCACATCTGCGTGTTTCTGCGCACTGTTTAATTCGCCGTGATGGTGAAATTGTGCAATATGTGCCTTTTACGGCACGAGCGTGGCATGCTGGGGTTTCCTTCTATAAAGGGCGAGAGAAATGCAATGATTTCTCGATTGGTATTGAGCTAGAAGGAACCGATGAGTGTGACTTTACGCCGCAGCAATATCAGCAATTATCGACACTCACTCAGCAACTTATTGAACACTATCCGGGCATTAAAGAAAATATTACCGGACATAGTGATGTCGCACCTGGTCGGAAAACAGATCCGGGACCTCATTTTAATTGGTCATATTACCGAGCACTATTAGCAAAATAACACAACAAAATGCATTAATAATTGATATTTTTGCATTGACAATCAATATA