Homologs in group_841

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04250 FBDBKF_04250 83.9 Morganella morganii S1 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD
EHELCC_05540 EHELCC_05540 83.9 Morganella morganii S2 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD
NLDBIP_05860 NLDBIP_05860 83.9 Morganella morganii S4 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD
LHKJJB_02740 LHKJJB_02740 83.9 Morganella morganii S3 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD
HKOGLL_06215 HKOGLL_06215 83.9 Morganella morganii S5 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD
PMI_RS10095 PMI_RS10095 68.9 Proteus mirabilis HI4320 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD

Distribution of the homologs in the orthogroup group_841

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_841

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P13016 1.31e-89 263 68 0 183 1 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Escherichia coli (strain K12)
E1W818 6.15e-89 261 69 0 179 3 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Salmonella typhimurium (strain SL1344)
P82974 7.09e-89 261 69 0 175 1 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Citrobacter freundii
P0CL03 2.64e-88 259 68 0 179 3 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P82973 4.7e-87 256 66 0 181 3 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Enterobacter cloacae
P44624 3.86e-74 224 59 1 178 3 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P75820 6.48e-16 76 37 3 119 1 amiD N-acetylmuramoyl-L-alanine amidase AmiD Escherichia coli (strain K12)
P81717 0.000628 42 27 6 128 1 cwhA N-acetylmuramoyl-L-alanine amidase A Achromobacter lyticus

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS08695
Feature type CDS
Gene ampD
Product 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD
Location 1799631 - 1800203 (strand: -1)
Length 573 (nucleotides) / 190 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_841
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF01510 N-acetylmuramoyl-L-alanine amidase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3023 Cell wall/membrane/envelope biogenesis (M) M N-acetyl-anhydromuramyl-L-alanine amidase AmpD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03806 N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28] - -

Protein Sequence

MEIKEGRLTVARQVISPHCDTRPADTVPRLLVIHNISLPPGQFGGPYIDQLFQGTLDPDEHPFFAEIQALRVSAHCLIRRTGEIVQYVPFHKRAWHAGLSCYQGTEKCNDFSVGIELEGTDTQAFTDEQYQALAQVTQALLSYYPQIKGHITGHSDIAPGRKTDPGPYFDWNRYRKSLAQTDTPATLPVK

Flanking regions ( +/- flanking 50bp)

TTGTACTTACTATCCGGTTCAGCAGACAGACTATGTTCACAGGAGAGCAGATGGAAATTAAGGAAGGCAGACTGACAGTCGCCCGGCAGGTTATTTCACCGCACTGTGATACCCGCCCGGCAGATACGGTTCCCCGCCTGTTGGTTATCCACAATATCAGTCTGCCGCCGGGGCAATTTGGCGGCCCGTATATTGATCAGCTTTTTCAGGGAACATTGGATCCGGATGAGCATCCGTTTTTTGCTGAAATTCAGGCTCTGCGGGTATCAGCACACTGTCTTATCCGTCGTACCGGGGAGATTGTTCAGTATGTTCCGTTTCATAAGCGCGCCTGGCATGCGGGGCTTTCCTGTTATCAGGGAACAGAAAAATGTAATGATTTTTCTGTCGGAATTGAACTGGAGGGGACGGATACACAGGCGTTTACGGATGAGCAGTATCAGGCGCTGGCGCAGGTGACACAGGCGCTTTTATCTTACTATCCGCAAATAAAAGGGCACATTACCGGACACAGTGATATTGCCCCCGGGCGTAAGACGGATCCGGGCCCGTATTTTGACTGGAATCGATACCGGAAGTCATTGGCACAGACAGATACGCCTGCCACATTGCCGGTAAAATAGCGCAGAGACGGGTAAAAAAGGAGAAGTGAAAAACTACCTGTTTATGTATT