Homologs in group_149

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9 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02620 FBDBKF_02620 100.0 Morganella morganii S1 dadA Glycine/D-amino acid oxidase (deaminating)
EHELCC_03090 EHELCC_03090 100.0 Morganella morganii S2 dadA Glycine/D-amino acid oxidase (deaminating)
NLDBIP_00370 NLDBIP_00370 100.0 Morganella morganii S4 dadA Glycine/D-amino acid oxidase (deaminating)
LHKJJB_01665 LHKJJB_01665 100.0 Morganella morganii S3 dadA Glycine/D-amino acid oxidase (deaminating)
F4V73_RS05080 F4V73_RS05080 94.5 Morganella psychrotolerans - FAD-binding oxidoreductase
PMI_RS10590 PMI_RS10590 58.4 Proteus mirabilis HI4320 - FAD-dependent oxidoreductase
PMI_RS13060 PMI_RS13060 28.4 Proteus mirabilis HI4320 - FAD-dependent oxidoreductase
PMI_RS14000 PMI_RS14000 83.9 Proteus mirabilis HI4320 - FAD-dependent oxidoreductase
PMI_RS15210 PMI_RS15210 24.4 Proteus mirabilis HI4320 - TIGR03364 family FAD-dependent oxidoreductase

Distribution of the homologs in the orthogroup group_149

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_149

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8GAI3 7.98e-14 77 24 5 258 1 abo 4-methylaminobutanoate oxidase (formaldehyde-forming) Paenarthrobacter nicotinovorans
Q52671 8.23e-14 76 24 18 434 3 soxB Sarcosine oxidase subunit beta Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
Q99LB7 1.38e-13 77 22 15 448 1 Sardh Sarcosine dehydrogenase, mitochondrial Mus musculus
Q9UL12 1.58e-13 76 22 17 448 1 SARDH Sarcosine dehydrogenase, mitochondrial Homo sapiens
Q64380 7.89e-13 74 21 15 448 1 Sardh Sarcosine dehydrogenase, mitochondrial Rattus norvegicus
Q9AGP3 3.54e-12 71 25 13 434 1 soxB Sarcosine oxidase subunit beta Arthrobacter sp.
Q88Q83 1.51e-11 69 23 13 416 1 thiO Glycine oxidase Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
P40875 3.41e-11 68 24 13 434 1 soxB Sarcosine oxidase subunit beta Corynebacterium sp. (strain P-1)
P33642 3.83e-11 68 23 16 411 3 thiO Glycine oxidase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q63342 1.26e-09 64 20 12 428 1 Dmgdh Dimethylglycine dehydrogenase, mitochondrial Rattus norvegicus
Q9D826 3.74e-09 62 23 19 433 1 Pipox Peroxisomal sarcosine oxidase Mus musculus
P40873 4.26e-09 62 23 10 278 1 soxA Monomeric sarcosine oxidase Arthrobacter sp. (strain TE1826)
B1JHH1 1.72e-08 60 24 8 257 3 solA N-methyl-L-tryptophan oxidase Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q669J9 1.72e-08 60 24 8 257 3 solA N-methyl-L-tryptophan oxidase Yersinia pseudotuberculosis serotype I (strain IP32953)
A4TLT6 1.72e-08 60 24 8 257 3 solA N-methyl-L-tryptophan oxidase Yersinia pestis (strain Pestoides F)
Q1CI06 1.72e-08 60 24 8 257 3 solA N-methyl-L-tryptophan oxidase Yersinia pestis bv. Antiqua (strain Nepal516)
A9R633 1.72e-08 60 24 8 257 3 solA N-methyl-L-tryptophan oxidase Yersinia pestis bv. Antiqua (strain Angola)
P58526 1.72e-08 60 24 8 257 3 solA N-methyl-L-tryptophan oxidase Yersinia pestis
B2K770 1.72e-08 60 24 8 257 3 solA N-methyl-L-tryptophan oxidase Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q1C6L1 1.72e-08 60 24 8 257 3 solA N-methyl-L-tryptophan oxidase Yersinia pestis bv. Antiqua (strain Antiqua)
A7FH13 1.72e-08 60 24 8 257 3 solA N-methyl-L-tryptophan oxidase Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
Q9UI17 3.57e-08 59 21 8 315 1 DMGDH Dimethylglycine dehydrogenase, mitochondrial Homo sapiens
Q7NWR6 3.75e-08 59 24 18 472 3 dadA D-amino acid dehydrogenase Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / CCUG 213 / NBRC 12614 / NCIMB 9131 / NCTC 9757 / MK)
Q9DBT9 7.53e-08 58 19 12 428 1 Dmgdh Dimethylglycine dehydrogenase, mitochondrial Mus musculus
Q50LF2 1.98e-07 56 23 12 418 1 soxB Sarcosine oxidase subunit beta Corynebacterium sp. (strain U-96)
P40859 2.28e-07 56 22 8 267 1 soxA Monomeric sarcosine oxidase Bacillus sp. (strain B-0618)
Q9P0Z9 2.59e-07 56 21 13 425 1 PIPOX Peroxisomal sarcosine oxidase Homo sapiens
Q9AGP8 8.54e-07 55 22 16 439 1 dmg Dimethylglycine oxidase Arthrobacter globiformis
Q89T28 2.34e-06 53 26 4 196 3 dadA D-amino acid dehydrogenase Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
B7UP73 5.48e-06 52 23 18 434 3 solA N-methyl-L-tryptophan oxidase Escherichia coli O127:H6 (strain E2348/69 / EPEC)
Q8FIR3 8.17e-06 51 23 18 434 3 solA N-methyl-L-tryptophan oxidase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
B7NL75 9.66e-06 51 23 18 434 3 solA N-methyl-L-tryptophan oxidase Escherichia coli O7:K1 (strain IAI39 / ExPEC)
B7MTJ0 1.03e-05 51 23 18 434 3 solA N-methyl-L-tryptophan oxidase Escherichia coli O81 (strain ED1a)
Q1RD98 1.14e-05 51 23 18 434 3 solA N-methyl-L-tryptophan oxidase Escherichia coli (strain UTI89 / UPEC)
Q0TJ15 1.14e-05 51 23 18 434 3 solA N-methyl-L-tryptophan oxidase Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A1A9V4 1.14e-05 51 23 18 434 3 solA N-methyl-L-tryptophan oxidase Escherichia coli O1:K1 / APEC
B7MIK0 1.14e-05 51 23 18 434 3 solA N-methyl-L-tryptophan oxidase Escherichia coli O45:K1 (strain S88 / ExPEC)
B1LIV1 1.42e-05 50 23 18 434 3 solA N-methyl-L-tryptophan oxidase Escherichia coli (strain SMS-3-5 / SECEC)
O87388 1.53e-05 50 24 13 425 3 soxB Sarcosine oxidase subunit beta Rhizobium meliloti (strain 1021)
B7LT77 2.52e-05 50 23 19 429 3 solA N-methyl-L-tryptophan oxidase Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
C0PBF8 3.99e-05 49 29 2 110 1 DAO D-amino-acid oxidase Zea mays
Q7TSQ8 5.55e-05 49 24 6 221 1 Pdpr Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial Mus musculus
Q2IZZ7 7.36e-05 48 25 4 200 3 dadA D-amino acid dehydrogenase Rhodopseudomonas palustris (strain HaA2)
P40854 0.000117 48 24 6 221 1 soxA Monomeric sarcosine oxidase Streptomyces sp. (strain KB210-8SY)
A4SNB0 0.000219 47 22 12 380 3 dadA D-amino acid dehydrogenase Aeromonas salmonicida (strain A449)
Q7WI07 0.000298 47 24 3 176 3 dadA D-amino acid dehydrogenase Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
O31616 0.000383 46 22 5 224 1 thiO Glycine oxidase Bacillus subtilis (strain 168)
Q55710 0.000415 46 33 0 71 3 thiO/thiG Bifunctional protein ThiO/ThiG Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q7W641 0.000486 46 24 3 176 3 dadA D-amino acid dehydrogenase Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)
Q6FFR5 0.000729 45 22 6 277 3 dadA D-amino acid dehydrogenase Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_01705
Feature type CDS
Gene dadA
Product Glycine/D-amino acid oxidase (deaminating)
Location 328050 - 329474 (strand: -1)
Length 1425 (nucleotides) / 474 (amino acids)

Contig

Accession ZDB_679
Length 398279 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_149
Orthogroup size 10
N. genomes 7

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Genomic region

Domains

PF01266 FAD dependent oxidoreductase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0665 Amino acid transport and metabolism (E) E Glycine/D-amino acid oxidase (deaminating)

Protein Sequence

MKISRRKLILGVGAAGVLAGGASVLVPMVRRDGKFVESTSRAKHVDGTEGALPKESDAVIIGGGMMGIMTAINLAERGMSVTVLEKGEIAGEQSGRAYSQIISYKTSKEIFPLHHYGKMLWRGMNEKIGADTSYRTQGRVEVPSSAEDLAKSQAWVENAKEWAADFEAPLNTRFIQGDELKKRLVDAKTDWPIAGFEEDSGSVDPETGVPVLAQYAKSLGVKIYTNCAVRGIETAGGKVSDVVTEKGAIKTSHVVLTGGIWSRLFMGNLGIDIPTLNVYLSQQRVSGVPGAPRGNVHLPSGIHFREQADGTYAVAPRIFTSSVVKDSFLLGPKFLHLLGGGELPLEFSIGEDLFNSFKMATSWNLDEVTPFETYRIATATQNTEHLDAVFARMKAEFPVFEQSKVVERWGAVVAPTYDELPIISEVKEYPGLVINTATVWGMTEGPASGEITADIVTGKKPVIDPAPFSLSRFS

Flanking regions ( +/- flanking 50bp)

TTAATTAAAAAAATGCCACACAAATATTACAGATAATGATGAGGCTTTAGATGAAAATCTCACGCAGAAAGTTAATTTTAGGGGTTGGTGCTGCCGGCGTACTGGCAGGTGGTGCTTCAGTATTAGTTCCTATGGTTCGCCGCGACGGCAAATTTGTGGAATCGACTTCACGCGCAAAACATGTTGACGGCACCGAAGGTGCATTACCGAAAGAGTCCGATGCAGTCATTATCGGCGGCGGCATGATGGGGATCATGACAGCGATTAACCTGGCGGAAAGAGGCATGAGCGTCACCGTCCTGGAAAAAGGTGAAATCGCCGGTGAGCAGTCCGGACGTGCTTACAGCCAGATCATCAGCTACAAAACATCAAAAGAAATATTCCCGCTGCACCATTACGGCAAAATGTTATGGCGTGGTATGAATGAAAAAATCGGGGCGGATACCAGCTATCGTACCCAGGGCCGTGTTGAGGTACCGTCAAGCGCAGAAGATCTCGCAAAATCACAGGCCTGGGTTGAGAATGCCAAAGAGTGGGCCGCTGATTTTGAAGCACCGCTCAACACCCGTTTCATTCAGGGCGACGAACTGAAAAAACGCCTGGTTGATGCCAAAACAGACTGGCCGATCGCCGGTTTTGAAGAAGATTCAGGCAGTGTTGACCCGGAAACCGGTGTACCGGTTCTGGCGCAGTATGCCAAATCCCTGGGTGTTAAAATCTACACTAACTGCGCGGTCCGTGGTATCGAAACTGCCGGTGGTAAAGTCTCTGATGTGGTCACAGAGAAGGGTGCAATCAAAACCTCTCATGTGGTCCTGACCGGCGGTATCTGGTCACGCCTGTTTATGGGTAATCTGGGCATTGATATCCCGACACTGAACGTCTATCTGTCACAACAGCGTGTTTCCGGCGTTCCGGGCGCACCACGCGGTAACGTGCATCTGCCGAGCGGCATTCACTTCCGCGAGCAGGCAGACGGCACATATGCCGTGGCACCGCGTATCTTCACCAGCTCTGTGGTGAAAGACAGCTTCCTGCTGGGGCCGAAATTCCTGCATCTGCTGGGCGGCGGTGAGCTGCCGCTGGAATTCTCCATCGGTGAAGATTTGTTCAACTCCTTCAAAATGGCAACATCCTGGAACCTCGATGAAGTCACACCGTTCGAGACTTACCGCATCGCAACCGCCACACAGAATACCGAACACCTGGATGCGGTATTTGCCCGCATGAAAGCGGAATTCCCTGTATTTGAACAATCGAAAGTCGTTGAACGCTGGGGCGCGGTTGTTGCACCAACCTACGACGAACTGCCGATTATTTCTGAAGTGAAAGAGTATCCGGGTCTGGTGATCAACACCGCGACTGTCTGGGGTATGACAGAAGGTCCGGCATCCGGTGAAATCACTGCGGATATCGTGACCGGTAAAAAACCGGTTATTGACCCGGCTCCGTTTAGTCTTTCACGTTTTAGTTAATTTTCTGATTACTTACGTTGATACTATTAAGAGGCTTAATATGCGTTACA