Homologs in group_3072

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_16990 EHELCC_16990 100.0 Morganella morganii S2 ttdA Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain
NLDBIP_18370 NLDBIP_18370 100.0 Morganella morganii S4 ttdA Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain
LHKJJB_09255 LHKJJB_09255 100.0 Morganella morganii S3 ttdA Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain
HKOGLL_08805 HKOGLL_08805 100.0 Morganella morganii S5 ttdA Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain
F4V73_RS13800 F4V73_RS13800 94.6 Morganella psychrotolerans - fumarate hydratase

Distribution of the homologs in the orthogroup group_3072

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3072

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AC33 0.0 839 71 0 547 1 fumA Fumarate hydratase class I, aerobic Escherichia coli (strain K12)
P0AC34 0.0 839 71 0 547 3 fumA Fumarate hydratase class I, aerobic Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8X4P8 0.0 835 70 0 547 3 fumA Fumarate hydratase class I, aerobic Escherichia coli O157:H7
P14407 0.0 826 70 0 547 1 fumB Fumarate hydratase class I, anaerobic Escherichia coli (strain K12)
P40720 0.0 825 71 0 543 3 fumA Fumarate hydratase class I, aerobic Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
E9AE57 0.0 647 59 0 514 1 FH2 Fumarate hydratase 2 Leishmania major
Q4QAU9 0.0 645 57 5 533 1 FH1 Fumarate hydratase 1, mitochondrial Leishmania major
Q04718 6.41e-24 108 24 19 489 3 fumA Putative fumarate hydratase class I Geobacillus stearothermophilus
Q58034 4.11e-22 97 34 3 178 1 MJ0617 Putative L(+)-tartrate dehydratase subunit beta Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q58690 1.36e-14 77 25 9 293 1 MJ1294 Putative L(+)-tartrate dehydratase subunit alpha Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q8XBK5 4.46e-12 68 27 5 170 3 ttdB L(+)-tartrate dehydratase subunit beta Escherichia coli O157:H7
Q3YXI1 7.11e-12 68 26 5 170 3 ttdB L(+)-tartrate dehydratase subunit beta Shigella sonnei (strain Ss046)
P0AC37 8.85e-12 67 26 5 170 3 ttdB L(+)-tartrate dehydratase subunit beta Shigella flexneri
Q1R6R9 8.85e-12 67 26 5 170 3 ttdB L(+)-tartrate dehydratase subunit beta Escherichia coli (strain UTI89 / UPEC)
P0AC35 8.85e-12 67 26 5 170 1 ttdB L(+)-tartrate dehydratase subunit beta Escherichia coli (strain K12)
P0AC36 8.85e-12 67 26 5 170 3 ttdB L(+)-tartrate dehydratase subunit beta Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TD44 8.85e-12 67 26 5 170 3 ttdB L(+)-tartrate dehydratase subunit beta Escherichia coli O6:K15:H31 (strain 536 / UPEC)
Q31WX2 1.08e-10 64 26 5 170 3 ttdB L(+)-tartrate dehydratase subunit beta Shigella boydii serotype 4 (strain Sb227)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_18795
Feature type CDS
Gene ttdA
Product Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain
Location 5859 - 7517 (strand: 1)
Length 1659 (nucleotides) / 552 (amino acids)
In genomic island -

Contig

Accession contig_36
Length 27638 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3072
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF05681 Fumarate hydratase (Fumerase)
PF05683 Fumarase C-terminus

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1951 Energy production and conversion (C) C Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain

Kegg Ortholog Annotation(s)

Protein Sequence

MTNKTFEYQEPFPLSEDKTDYYLLSREHVSTATFEGREMLKVEPEALTLIAQQAVHDASYFLRPAHQKQVAQILSDPEASENDKYVALQLLRNAEISAKGVLPNCQDTGTATIVAKKGQQVWTGVNDAECLSRGIYNTFQRENLRYSQNAALDMYTEVNTGTNLPAQIDILATEGAEYHFLFINKGGGSANKTALYQETKAILEHDRLKAFLIDKMKYLGTTACPPYHIAFCIGGTSPEMNLKTVKLASTKYYDNLPDTGNELGRAFRDRELEQELLEATREFGFGAQFGGKYFAHDIRVIRLPRHGGSCPIGLALSCSSDRNIKGKITKDGIWLEKLEYNPASYIPESMRKENESDMVSIDLNRPMAEILKELSKYPVSTRVSLSGPLIIARDIAHMKLKERLDSGQGLPQYFKDHMVYYAGPAKKPEDLVSGSLGPTTGNRMDPYVDLFQSQGGSMLMLAKGNRSQAVTDSCKAHGGFYLGSIGGSAAILAQEYVKSLDILEYPELGMEAVWKMEVEGLPAFILVDDKGNNFFEQVQTKKCEKCVAGQPA

Flanking regions ( +/- flanking 50bp)

TTGTGAGTCAATAGGTTCTTCATTTTTCTGATTTAATACGAGTGAATATAATGACAAATAAAACTTTTGAGTATCAGGAGCCATTCCCGTTATCGGAAGATAAAACGGACTATTATCTGCTGAGCAGGGAGCACGTTTCCACGGCGACATTTGAAGGCCGTGAGATGCTTAAGGTTGAACCTGAAGCGCTGACGCTGATTGCCCAGCAGGCCGTGCATGATGCCTCCTATTTCCTCCGTCCGGCACATCAGAAACAGGTTGCACAGATTTTAAGCGACCCTGAAGCCAGCGAAAACGACAAATATGTCGCGCTGCAACTGCTGCGCAATGCGGAAATCTCTGCCAAAGGGGTTCTGCCGAACTGTCAGGATACCGGCACCGCGACTATCGTGGCGAAAAAAGGCCAGCAGGTATGGACCGGCGTCAACGATGCGGAATGCTTATCCCGTGGTATTTACAACACATTCCAGCGTGAAAACCTGCGTTATTCACAGAACGCAGCGCTGGATATGTACACGGAAGTGAATACCGGCACCAACTTACCTGCACAGATTGATATCCTGGCCACCGAAGGCGCGGAATATCACTTCCTGTTTATCAATAAAGGCGGCGGCTCTGCCAACAAAACCGCGCTGTATCAGGAAACCAAGGCCATTCTGGAACATGATCGCCTGAAAGCATTCCTGATCGACAAAATGAAGTATCTCGGTACCACTGCCTGCCCGCCGTACCATATTGCGTTCTGTATCGGCGGCACCTCACCGGAAATGAACCTGAAAACGGTGAAACTGGCGTCCACCAAATATTATGACAATCTGCCGGATACCGGTAATGAGCTGGGACGCGCCTTCCGCGATCGCGAGCTGGAGCAGGAACTGCTGGAAGCCACCCGTGAGTTCGGCTTCGGTGCCCAGTTTGGCGGTAAATATTTCGCCCATGATATCCGTGTGATCCGTCTGCCGCGTCACGGCGGTTCCTGCCCGATTGGTCTGGCACTGTCCTGTTCGTCTGACCGTAACATCAAAGGCAAGATCACCAAAGACGGGATCTGGCTGGAGAAACTGGAATACAATCCGGCAAGTTACATTCCGGAATCCATGCGTAAAGAGAATGAAAGCGATATGGTCAGTATCGATCTGAACCGGCCGATGGCGGAAATTCTCAAAGAGCTGAGCAAGTATCCGGTCTCCACCCGCGTCTCTCTCAGCGGCCCGCTCATCATTGCCCGTGATATCGCGCATATGAAACTGAAAGAGCGCCTGGACAGCGGACAGGGATTACCGCAGTATTTCAAAGATCATATGGTGTACTATGCGGGTCCGGCGAAAAAACCGGAAGACCTGGTCTCCGGCTCTCTCGGCCCGACCACCGGTAACCGGATGGATCCGTATGTGGACTTGTTCCAGTCGCAGGGCGGCAGTATGCTGATGCTGGCAAAAGGAAACCGCAGTCAGGCGGTGACCGATTCCTGTAAAGCACACGGCGGCTTCTATCTGGGCAGCATCGGCGGTTCTGCGGCGATTCTGGCTCAGGAATATGTGAAGAGCCTGGACATTCTGGAATACCCTGAACTGGGTATGGAAGCGGTCTGGAAAATGGAAGTGGAAGGGCTCCCGGCCTTTATCCTGGTGGATGACAAAGGGAATAACTTCTTCGAACAGGTTCAGACGAAAAAATGTGAGAAATGCGTGGCAGGCCAGCCTGCCTGAGCCAACACTTTCCCTGAGGAGTTTGCATGAGCGACGAACGTTATCAACAA