Orthogroup:group_3072


Homologs in group_3072

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_18810 FBDBKF_18810 Morganella morganii S1 lysR DNA-binding transcriptional regulator, LysR family
EHELCC_17005 EHELCC_17005 Morganella morganii S2 lysR DNA-binding transcriptional regulator, LysR family
NLDBIP_18385 NLDBIP_18385 Morganella morganii S4 lysR DNA-binding transcriptional regulator, LysR family
LHKJJB_09240 LHKJJB_09240 Morganella morganii S3 lysR DNA-binding transcriptional regulator, LysR family
HKOGLL_08790 HKOGLL_08790 Morganella morganii S5 lysR DNA-binding transcriptional regulator, LysR family
F4V73_RS13785 F4V73_RS13785 Morganella psychrotolerans - LysR substrate-binding domain-containing protein

Distribution of group_3072 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_3072 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_3072

Orthogroup content: 6 members

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This page summarizes the annotation of all members of the orthologous group group_3072.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 lysR 5
2 - 1

Product

# Product Occurence
1 DNA-binding transcriptional regulator, LysR family 5
2 LysR substrate-binding domain-containing protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0583 6 K Transcription (K) DNA-binding transcriptional regulator, LysR family

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03566 6 LysR family transcriptional regulator, glycine cleavage system transcriptional activator Biofilm formation - Escherichia coli -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00126 6 Bacterial regulatory helix-turn-helix protein, lysR family
PF03466 6 LysR substrate binding domain

Annotations of the 162 SwissProt hits

Annotation Number of occurrences
AhcY transcriptional activator HvrB 1
Carbapenem-hydrolyzing beta-lactamase transcriptional activator 2
Glycine cleavage system transcriptional activator 3
Glycine cleavage system transcriptional activator homolog 1
HTH-type transcriptional activator AllS 7
HTH-type transcriptional activator AmpR 7
HTH-type transcriptional activator CmpR 3
HTH-type transcriptional regulator AbaB 1
HTH-type transcriptional regulator AlsR 1
HTH-type transcriptional regulator BbuR 1
HTH-type transcriptional regulator BlaA 1
HTH-type transcriptional regulator CatR 1
HTH-type transcriptional regulator CbbR 2
HTH-type transcriptional regulator CfxR 1
HTH-type transcriptional regulator CrgA 2
HTH-type transcriptional regulator CynR 2
HTH-type transcriptional regulator CzcR 1
HTH-type transcriptional regulator DgdR 1
HTH-type transcriptional regulator DsdC 1
HTH-type transcriptional regulator HdfR 48
HTH-type transcriptional regulator MetR 7
HTH-type transcriptional regulator NmoR 1
HTH-type transcriptional regulator PerR 1
HTH-type transcriptional regulator PgrR 1
HTH-type transcriptional regulator PtxR 1
HTH-type transcriptional regulator SoxR 1
HTH-type transcriptional regulator TdcA 3
HTH-type transcriptional regulator TfdT 1
HTH-type transcriptional regulator TrpI 2
HTH-type transcriptional regulator TtuA 1
HTH-type transcriptional regulator YjiE 1
HTH-type transcriptional regulator YofA 1
HTH-type transcriptional repressor PA14_22550 1
Hca operon transcriptional activator HcaR 1
Iron-regulated virulence regulatory protein IrgB 2
Nitrogen assimilation regulatory protein nac 1
Probable HTH-type transcriptional regulator LeuO 1
Probable HTH-type transcriptional regulator LrrA 1
Probable HTH-type transcriptional regulator LtrA 1
Probable RuBisCO transcriptional regulator 15
Probable cat1 operon transcriptional activator 1
Probable hydrogen peroxide-inducible genes activator 3
Probable hydrogen peroxide-inducible genes activator (Fragment) 1
Probable nitrogen assimilation transcriptional activator 2
Putative transcriptional regulator 1
RuBisCO operon transcriptional regulator 2
Transcriptional activator protein LysR 1
Transcriptional dual regulator GltC 1
Uncharacterized HTH-type transcriptional regulator HI_1364 1
Uncharacterized HTH-type transcriptional regulator YafC 1
Uncharacterized HTH-type transcriptional regulator YahB 1
Uncharacterized HTH-type transcriptional regulator YbhD 1
Uncharacterized HTH-type transcriptional regulator YcaN 1
Uncharacterized HTH-type transcriptional regulator YcgK 1
Uncharacterized HTH-type transcriptional regulator YdcI 1
Uncharacterized HTH-type transcriptional regulator YfeR 2
Uncharacterized HTH-type transcriptional regulator YfiE 1
Uncharacterized HTH-type transcriptional regulator YhjC 1
Uncharacterized HTH-type transcriptional regulator YusT 1
Uncharacterized HTH-type transcriptional regulator YvbU 1
Uncharacterized HTH-type transcriptional regulator YwbI 1
Uncharacterized HTH-type transcriptional regulator YwqM 1
Uncharacterized HTH-type transcriptional regulator YxjO 1
Uncharacterized HTH-type transcriptional regulator YybE 1
Uncharacterized HTH-type transcriptional regulator in ibpB-leuC intergenic region 1
Uncharacterized HTH-type transcriptional regulator y4mQ 1

Protein length

Min length 302
Max length 303
Mean length (sd) 302.8 (0.4)
Median length 303.0

Protein length distribution