Homologs in group_1968

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_15565 EHELCC_15565 100.0 Morganella morganii S2 rne ribonuclease E
NLDBIP_16095 NLDBIP_16095 100.0 Morganella morganii S4 rne ribonuclease E
LHKJJB_15745 LHKJJB_15745 100.0 Morganella morganii S3 rne ribonuclease E
HKOGLL_14865 HKOGLL_14865 100.0 Morganella morganii S5 rne ribonuclease E
F4V73_RS07555 F4V73_RS07555 84.1 Morganella psychrotolerans rne ribonuclease E
PMI_RS04180 PMI_RS04180 66.1 Proteus mirabilis HI4320 rne ribonuclease E

Distribution of the homologs in the orthogroup group_1968

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1968

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P21513 0.0 1050 57 19 1111 1 rne Ribonuclease E Escherichia coli (strain K12)
P44443 0.0 858 71 6 610 3 rne Ribonuclease E Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P44443 3.47e-07 58 28 9 258 3 rne Ribonuclease E Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8K9J9 0.0 851 68 0 575 3 rne Ribonuclease E Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57429 0.0 800 75 0 503 3 rne Ribonuclease E Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q89AH3 0.0 537 61 0 402 3 rne Putative ribonuclease E Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q8YP69 5.04e-70 251 39 6 386 1 rne Ribonuclease E Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
A0R152 9.23e-68 250 37 9 389 1 rne Ribonuclease E Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
P72656 1.49e-67 243 36 5 379 1 rne Ribonuclease E Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P71905 1.14e-66 246 36 8 393 1 rne Ribonuclease E Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
A0A0H3NGK0 5.46e-66 234 36 10 439 1 rng Ribonuclease G Salmonella typhimurium (strain SL1344)
P45175 9.38e-66 233 35 7 460 3 rng Ribonuclease G Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0A9J3 3.08e-65 232 35 10 439 3 rng Ribonuclease G Shigella flexneri
P0A9J0 3.08e-65 232 35 10 439 1 rng Ribonuclease G Escherichia coli (strain K12)
P0A9J1 3.08e-65 232 35 10 439 3 rng Ribonuclease G Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9J2 3.08e-65 232 35 10 439 3 rng Ribonuclease G Escherichia coli O157:H7
P51211 3.47e-49 186 32 7 373 3 rne Ribonuclease E/G-like protein Porphyra purpurea
Q1XDS6 7.37e-48 182 31 6 366 3 rne Ribonuclease E/G-like protein Neopyropia yezoensis
F4IV66 4.74e-47 186 35 7 332 1 RNE Ribonuclease E/G-like protein, chloroplastic Arabidopsis thaliana
O78453 3.65e-18 92 27 16 374 3 rne Ribonuclease E/G-like protein Guillardia theta
Q9TL10 2.74e-05 51 34 2 112 3 rne Ribonuclease E/G-like protein Nephroselmis olivacea

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_14760
Feature type CDS
Gene rne
Product ribonuclease E
Location 47868 - 51032 (strand: 1)
Length 3165 (nucleotides) / 1054 (amino acids)

Contig

Accession contig_19
Length 86773 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1968
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00575 S1 RNA binding domain
PF10150 Ribonuclease E/G family
PF20833 RNase E/G, Thioredoxin-like domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1530 Translation, ribosomal structure and biogenesis (J) J Ribonuclease G or E

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K08300 ribonuclease E [EC:3.1.26.12] RNA degradation -

Protein Sequence

MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPVKEIAREYFPANYHASGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSALDIPDGMGLIVRTAGVGKSADALRWDLEYRIKHWEAIKKVAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILELARKHITAIGRADFASKIKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGAIVIDTTEALTAIDINSSRSTRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRMREAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLALSILRLIEEEALKENTHQVHAIVPVPVASYLLNEKRQAVSAIEARQAGVSVIIVPNNQMETPHFRVVRVRKGDEIGTLSYRLPEKYEAESAAGEEEETQERRAPEQPAINAFAITSDAPVPAQTAATRKPESKRDNRQDKQAPAASEGGFFSRLIKKLFGSAPAVQEETEQKEKKQTNDNNRRSGNDRNKQRRNRRDRNDRNGERTERADRPERSERSDNESRNKRDRDTVNEPRKGRNQNTPNEDLTPEELAAREAQQQLRREQRAERQRRRQDEKRVQQDAKKLRAQQEDQDALNSDGNTEDDDAPTPVRQRRTRRQLNGSVRITDGETQTKPAVTAPVPVVIDNAPVAVPADTDVPAAAENNGDEAHSDNILPRRSRRSPRHLRVSGQRRRRYREDRQLTQSPVPLEMAVFSPELASGKVWIQYPVVTPAAQAEQEIAAETPEITETTAVITETAVVAQVMTEAAETTVVAEQFSLTVASEAPQTTAPEETPVADTVTESVPAEEPVQETADVVASEPVVADVIVTEPVAVTEPVAPVVVAEPEVIAEPEAVVVAEPVTAPVAAPVTETTVVAAGRHAYSPMTKAPAPATTGEAFVITEYQREAREAYALHGAGGHAATNHAASEPSKTLL

Flanking regions ( +/- flanking 50bp)

GAAATTGCCCGCAGCGCACTAATTAAATGAAAAAAATTGAGTAACTTATAATGAAAAGAATGTTAATCAACGCAACTCAGCAGGAAGAGTTGCGTGTTGCCCTTGTCGACGGGCAGCGCTTGTATGATCTGGATATCGAAAGCCCCGGTCACGAACAAAAAAAAGCAAACATCTATAAAGGGAAAATCACCCGTATTGAACCGAGTTTAGAAGCTGCTTTTGTTGACTATGGCGCAGAGCGTCACGGTTTCCTTCCCGTCAAAGAAATTGCCCGCGAGTATTTCCCTGCTAATTACCACGCATCCGGCCGCCCGAATATCAAAGATGTCCTGAGAGAAGGTCAGGAAGTCATTGTTCAGGTGGACAAAGAAGAGCGCGGTAATAAAGGCGCGGCACTCACCACCTTTATCAGCCTGGCCGGCAGCTATCTGGTTCTGATGCCGAATAACCCGCGGGCCGGGGGGATCTCCCGCCGTATCGAAGGGGATGACCGCACCGAGCTGAAAGAAGCCCTGTCTGCCCTGGATATCCCGGATGGAATGGGTCTGATTGTCCGCACCGCCGGTGTCGGTAAATCAGCCGATGCCCTGCGCTGGGATCTCGAGTACCGTATCAAGCACTGGGAAGCCATCAAAAAAGTTGCTGAAGGCCGCCCTGCACCGTTCCTGATCCATCAGGAAAGTAATGTTATCGTCCGCGCGTTCCGTGATTACCTGCGCCCGGACATCGGTGAGATCCTCATCGATAACCCGAAAATTCTGGAACTGGCACGCAAGCACATCACTGCTATCGGCCGTGCGGATTTTGCCAGCAAAATTAAACTGTATCAGGGCGAAGTGCCGCTGTTCAGTCACTATCAGATTGAGTCGCAGATTGAATCCGCTTTCCAGCGCGAAGTCCGTCTGCCGTCCGGCGGTGCGATTGTTATCGACACCACCGAAGCCCTGACAGCTATCGATATCAACTCCTCCCGCTCAACACGCGGCGGTGATATCGAAGAAACTGCCTTTAACACCAACCTGGAAGCGGCGGATGAAATCGCCCGCCAGCTGCGTCTGCGTGACCTCGGCGGCCTGATTGTTATCGACTTTATCGATATGACCCCGGTCCGTCATCAGCGCGAAGTGGAAAACCGCATGCGCGAAGCTGTCCGTCAGGATCGCGCCCGTATCCAGATTGGCCGCATTTCCCGCTTTGGTCTGCTGGAGATGTCCCGTCAGCGCCTGAGCCCGTCACTGGGTGAATCAAGCCATCATGTGTGTCCGCGATGCAGCGGCACCGGAACTGTGCGTGATAACGAATCACTGGCGCTCTCCATTCTGCGTCTGATTGAAGAAGAAGCGCTGAAAGAGAATACCCATCAGGTACATGCAATTGTACCGGTGCCGGTCGCCTCTTATCTGCTGAACGAAAAACGCCAGGCTGTCAGTGCGATTGAAGCACGCCAGGCCGGTGTCAGCGTGATTATCGTACCGAATAACCAGATGGAAACCCCGCACTTCCGTGTGGTCCGTGTCCGTAAAGGTGATGAAATCGGTACCCTGAGCTACCGCCTGCCGGAGAAATACGAAGCGGAATCCGCTGCCGGTGAAGAAGAGGAAACTCAGGAACGCCGTGCACCGGAACAACCGGCTATCAATGCCTTTGCTATCACATCCGATGCACCGGTACCGGCACAGACTGCCGCCACCCGCAAACCGGAAAGCAAACGCGATAACCGTCAGGATAAGCAGGCACCTGCGGCTTCTGAAGGTGGCTTCTTCAGCCGTCTCATCAAAAAACTGTTCGGCTCCGCACCTGCTGTGCAGGAAGAAACTGAACAGAAAGAGAAAAAACAAACTAACGACAACAACCGCCGCAGCGGGAATGATCGTAACAAACAGCGCCGTAACCGCCGTGACCGTAATGATCGCAACGGCGAACGTACCGAGCGTGCTGACCGCCCTGAGCGCAGTGAACGCAGTGATAACGAATCGCGCAACAAACGCGATCGCGATACTGTGAATGAGCCGCGTAAAGGCCGTAATCAGAATACCCCGAACGAAGATCTGACACCGGAAGAGCTGGCCGCCCGCGAAGCACAGCAGCAGTTACGCCGTGAACAGCGTGCAGAGCGTCAGCGCCGCCGTCAGGACGAAAAACGTGTCCAGCAGGATGCGAAGAAACTGCGCGCCCAGCAGGAAGATCAGGATGCACTGAACAGTGACGGCAACACGGAAGATGATGATGCACCGACACCGGTTCGTCAGCGCCGTACCCGCCGTCAGCTGAACGGTTCTGTCCGTATCACTGATGGTGAAACACAGACTAAACCGGCTGTTACAGCACCGGTTCCGGTTGTTATCGATAATGCACCAGTGGCTGTTCCTGCGGATACCGACGTACCTGCAGCGGCTGAAAACAATGGTGATGAGGCACACAGCGATAACATCCTGCCGCGCCGCTCCCGCCGTTCACCGCGTCATCTGCGTGTGAGTGGTCAGCGCCGCCGCCGTTACCGTGAAGACCGTCAGCTGACGCAGTCTCCGGTTCCGCTGGAAATGGCTGTGTTCTCCCCTGAACTGGCTTCCGGTAAAGTGTGGATCCAGTATCCGGTTGTGACACCTGCTGCACAGGCAGAACAGGAAATCGCAGCTGAGACACCGGAAATCACCGAAACAACAGCTGTGATTACTGAAACCGCGGTTGTCGCTCAGGTGATGACTGAAGCGGCAGAAACCACCGTTGTAGCAGAGCAGTTCTCTCTGACTGTCGCGTCTGAGGCGCCTCAGACCACAGCGCCGGAAGAAACACCGGTTGCGGATACTGTCACTGAATCTGTACCGGCAGAAGAGCCTGTACAGGAAACGGCTGACGTTGTCGCCAGTGAGCCTGTTGTGGCTGACGTGATTGTTACTGAGCCTGTTGCTGTCACAGAACCTGTTGCACCGGTTGTTGTTGCAGAACCGGAAGTGATTGCAGAGCCTGAGGCAGTTGTTGTGGCTGAACCTGTTACCGCACCGGTTGCGGCTCCGGTTACTGAAACAACTGTCGTTGCTGCCGGCCGTCATGCTTATTCACCGATGACCAAAGCCCCTGCTCCGGCAACCACCGGCGAAGCCTTTGTTATCACCGAATACCAGCGTGAAGCCCGCGAAGCCTATGCGCTGCACGGTGCAGGCGGTCATGCGGCCACTAACCATGCTGCATCAGAGCCGTCAAAAACCCTGCTCTGATAATCCGCACTGAACTGAAAATGGCTCCCCCGGGAGCCATTTTTTTATGG