Homologs in group_3660

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3 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_12555 FBDBKF_12555 39.2 Morganella morganii S1 ygiQ Radical SAM superfamily enzyme YgiQ, UPF0313 family
F4V73_RS07790 F4V73_RS07790 39.5 Morganella psychrotolerans - radical SAM protein
F4V73_RS07830 F4V73_RS07830 94.4 Morganella psychrotolerans - radical SAM protein

Distribution of the homologs in the orthogroup group_3660

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3660

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q55914 7.24e-66 222 32 7 386 3 slr0309 Uncharacterized methyltransferase slr0309 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q8KCU0 7.45e-59 203 31 6 388 1 bchR Bacteriochlorophyllide d C-12(1)-methyltransferase Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)
Q8KBK9 2.26e-37 145 27 14 420 1 bchQ Bacteriochlorophyllide d C-8(2)-methyltransferase Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)
O58549 4.61e-26 113 23 12 423 3 PH0819 Uncharacterized methyltransferase PH0819 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
B3QHD1 5.49e-23 105 25 9 377 1 hpnP Hopanoid C-2 methylase Rhodopseudomonas palustris (strain TIE-1)
Q9RFD3 8.63e-22 102 24 11 419 3 bchE Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.)
P42349 1.68e-18 91 23 7 370 4 sll1242 Uncharacterized methyltransferase sll1242 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P26168 1.91e-17 88 23 14 433 1 bchE Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
Q56184 6.17e-13 74 21 10 404 1 fom3 Cytidylyl-2-hydroxyethylphosphonate methyltransferase Streptomyces wedmorensis
Q58882 8.39e-12 70 24 14 344 3 MJ1487 Uncharacterized methyltransferase MJ1487 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q60AV6 2.8e-10 65 23 16 391 1 hpnR Hopanoid C-3 methylase Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath)
Q7X2C7 1.92e-09 63 21 13 405 1 bchE Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase Rubrivivax gelatinosus
Q58275 5.24e-09 62 23 12 308 3 MJ0865 Putative methylthiotransferase MJ0865 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q48DN8 7.81e-08 58 27 10 229 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6)
Q4ZN97 8.23e-08 58 27 10 229 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Pseudomonas syringae pv. syringae (strain B728a)
Q87VY1 7.57e-07 55 26 10 229 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)
Q3IK75 2.53e-06 53 25 8 224 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Pseudoalteromonas translucida (strain TAC 125)
Q3K6B7 2.57e-06 53 25 9 227 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Pseudomonas fluorescens (strain Pf0-1)
Q9RV79 6.03e-06 52 23 8 213 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
Q4K5I3 8.18e-06 51 25 9 227 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)
A3D7M8 1.38e-05 51 25 9 238 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Shewanella baltica (strain OS155 / ATCC BAA-1091)
B1L8F3 2.13e-05 50 25 8 202 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Thermotoga sp. (strain RQ2)
A5IJD4 2.13e-05 50 25 8 202 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Thermotoga petrophila (strain ATCC BAA-488 / DSM 13995 / JCM 10881 / RKU-1)
Q475N7 2.29e-05 50 25 10 225 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197)
Q1QV24 2.49e-05 50 26 13 261 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11)
Q8Y206 2.55e-05 50 26 8 223 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Ralstonia nicotianae (strain ATCC BAA-1114 / GMI1000)
Q83DX3 2.57e-05 50 25 10 227 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
A9NC58 2.57e-05 50 25 10 227 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Coxiella burnetii (strain RSA 331 / Henzerling II)
B6J1A4 2.57e-05 50 25 10 227 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Coxiella burnetii (strain CbuG_Q212)
B6J853 2.57e-05 50 25 10 227 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Coxiella burnetii (strain CbuK_Q154)
Q3JEH9 3.1e-05 50 25 8 224 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Nitrosococcus oceani (strain ATCC 19707 / BCRC 17464 / JCM 30415 / NCIMB 11848 / C-107)
Q7MN00 3.13e-05 50 25 11 269 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Vibrio vulnificus (strain YJ016)
A9KZZ3 3.22e-05 50 25 9 238 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Shewanella baltica (strain OS195)
A6WRJ1 3.22e-05 50 25 9 238 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Shewanella baltica (strain OS185)
A9KCP2 3.52e-05 49 25 10 227 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Coxiella burnetii (strain Dugway 5J108-111)
Q15TR4 5.41e-05 49 24 8 222 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087)
Q1LR87 5.94e-05 48 26 11 226 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34)
Q8DFE8 6.09e-05 48 25 11 269 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Vibrio vulnificus (strain CMCP6)
Q9KTE0 6.09e-05 48 25 10 231 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A5F2X6 6.09e-05 48 25 10 231 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Q7NQI8 6.16e-05 48 25 9 224 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / CCUG 213 / NBRC 12614 / NCIMB 9131 / NCTC 9757 / MK)
B2AHA4 6.66e-05 48 24 10 225 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Cupriavidus taiwanensis (strain DSM 17343 / BCRC 17206 / CCUG 44338 / CIP 107171 / LMG 19424 / R1)
A1RGV4 8.12e-05 48 24 9 239 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Shewanella sp. (strain W3-18-1)
Q87RP4 8.19e-05 48 25 10 227 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Q55373 8.43e-05 48 21 9 294 3 bchE Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
B0UUU9 9.1e-05 48 24 9 226 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Histophilus somni (strain 2336)
Q0I3Z1 9.1e-05 48 24 9 226 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Histophilus somni (strain 129Pt)
A4Y9E1 0.000101 48 24 9 239 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Shewanella putrefaciens (strain CN-32 / ATCC BAA-453)
Q0KE93 0.000156 47 24 10 225 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
Q51470 0.000157 47 24 9 222 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q02SE8 0.000157 47 24 9 222 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Pseudomonas aeruginosa (strain UCBPP-PA14)
Q5SME9 0.00016 47 21 8 202 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Q72J39 0.000167 47 21 8 202 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)
A1VSP2 0.000175 47 25 10 223 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Polaromonas naphthalenivorans (strain CJ2)
A7N1G9 0.000193 47 25 10 229 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Vibrio campbellii (strain ATCC BAA-1116)
Q3Z6Q4 0.0002 47 24 7 199 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Dehalococcoides mccartyi (strain ATCC BAA-2266 / KCTC 15142 / 195)
B2UFP3 0.000256 47 25 8 223 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Ralstonia pickettii (strain 12J)
B6EIN8 0.000328 46 25 10 236 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Aliivibrio salmonicida (strain LFI1238)
Q9L699 0.000371 46 24 8 224 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Pasteurella multocida (strain Pm70)
A9HIM2 0.000404 46 25 12 291 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / CCUG 37298 / CIP 103539 / LMG 7603 / PAl5)
Q12EH0 0.000423 46 24 9 223 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Polaromonas sp. (strain JS666 / ATCC BAA-500)
Q0AF59 0.000432 46 25 10 227 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Nitrosomonas eutropha (strain DSM 101675 / C91 / Nm57)
Q2GG00 0.000471 46 23 8 225 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Ehrlichia chaffeensis (strain ATCC CRL-10679 / Arkansas)
A9KMU9 0.000484 46 22 11 244 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Lachnoclostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
A9HZZ2 0.000529 46 25 11 227 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448)
A1K3J0 0.000533 45 24 9 225 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Azoarcus sp. (strain BH72)
A1WIL9 0.000543 45 23 15 331 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Verminephrobacter eiseniae (strain EF01-2)
Q3A594 0.000598 45 23 14 271 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Syntrophotalea carbinolica (strain DSM 2380 / NBRC 103641 / GraBd1)
A4VQY3 0.000603 45 25 8 218 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Stutzerimonas stutzeri (strain A1501)
Q5P760 0.000609 45 23 8 224 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Aromatoleum aromaticum (strain DSM 19018 / LMG 30748 / EbN1)
C0JRZ9 0.000615 45 21 5 211 1 tsrM Tryptophan 2-C-methyltransferase Streptomyces laurentii
Q12R22 0.000665 45 23 8 224 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
Q5PB69 0.000768 45 23 10 233 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Anaplasma marginale (strain St. Maries)
A4G267 0.000786 45 23 10 278 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Herminiimonas arsenicoxydans
A6SV24 0.000793 45 25 8 222 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Janthinobacterium sp. (strain Marseille)
Q9WZC1 0.000797 45 24 8 194 1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
B1VDD8 0.000806 45 24 8 207 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109)
A6V0C9 0.000836 45 24 9 222 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Pseudomonas aeruginosa (strain PA7)
Q2KWE0 0.001 45 23 9 226 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Bordetella avium (strain 197N)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_12595
Feature type CDS
Gene ygiQ
Product Radical SAM superfamily enzyme YgiQ, UPF0313 family
Location 34691 - 36085 (strand: -1)
Length 1395 (nucleotides) / 464 (amino acids)

Contig

Accession contig_15
Length 114235 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3660
Orthogroup size 4
N. genomes 2

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Genomic region

Domains

PF02310 B12 binding domain
PF04055 Radical SAM superfamily

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1032 General function prediction only (R) R Radical SAM superfamily enzyme YgiQ, UPF0313 family

Protein Sequence

MTQTVYTPQRPLDLVLLSPKGPLYRKRGGIFKRSLRYQPLTLTTLSALVPKSLPVNIRLIDESIEELPEDFTADLVAMTVITGNAPRAYELAAQMRAKNIPVVLGGPHVTLLPQEALQHADTVCTGYSEQSWPQLIRDFMAGNMQREYRQGADFTLDIPDLPFPERERFDAKHFLTQGVFEATRSCAHNCEFCVAPSAWGRKQFQHPVEWVVEDIRRYVERTGKRKVIFVDLNLVSDIGYAKRLFTALIPLNIQWFGLSTVLIAHNHELMDLMARSGCKGLLLGLETVSDGSLKDAGKKFNGSVDYKELIGDLHRLGIAIQGCFVFGLDHDTTDVFDHTVDLAIDAGIDLPRFSVLTPFPGTPLFKRLEEEQRILTTDWSLYDAQHVVFRPALMSAHELELGHERAWKKVYRYRSIAKRLWQARNFKPLALTANLGYRFYAHHLHQYYTCDWPVEHRPAKSGSH

Flanking regions ( +/- flanking 50bp)

CTGACCTCGCCTGACTGGCGTGCCATGTTTGAGATCAGGGAGTTTCCGTGATGACACAGACTGTTTATACGCCGCAGCGGCCGCTGGATCTGGTGCTGCTTTCGCCGAAAGGGCCGCTGTACCGCAAGCGGGGCGGGATTTTCAAACGCTCGCTGCGTTATCAGCCGCTGACGCTGACCACCCTTTCCGCACTGGTGCCGAAATCCCTGCCGGTTAATATCCGCCTGATTGATGAAAGTATTGAGGAACTGCCGGAGGATTTCACGGCAGATCTGGTGGCGATGACGGTGATCACGGGGAATGCGCCGCGCGCCTATGAACTGGCGGCACAGATGCGGGCGAAAAATATCCCCGTCGTGCTCGGCGGGCCGCATGTCACACTGCTGCCGCAGGAGGCGCTGCAGCACGCCGATACGGTCTGCACCGGCTATTCCGAGCAGAGCTGGCCGCAGCTTATCCGTGATTTTATGGCGGGTAATATGCAGCGTGAATACCGTCAGGGCGCGGATTTCACGCTTGATATCCCGGACTTGCCGTTTCCGGAACGCGAACGGTTTGATGCAAAGCATTTTCTCACCCAGGGGGTTTTTGAAGCGACACGCTCCTGTGCTCACAACTGTGAGTTCTGTGTTGCACCGAGTGCCTGGGGGCGTAAGCAGTTTCAGCATCCGGTGGAGTGGGTGGTTGAGGATATCCGCCGTTATGTGGAGCGCACCGGCAAACGGAAAGTAATTTTTGTCGACCTGAACCTGGTGTCGGATATCGGTTATGCCAAACGGCTGTTTACCGCACTGATCCCGCTGAATATTCAGTGGTTCGGTTTATCCACCGTGCTGATAGCTCATAACCACGAACTGATGGATCTGATGGCCCGCAGCGGCTGCAAAGGGCTGCTGCTGGGGCTGGAAACGGTCAGTGACGGCAGCCTGAAAGATGCCGGGAAGAAATTTAACGGCTCGGTGGATTATAAAGAACTGATCGGTGACCTGCACCGGCTGGGAATTGCAATTCAGGGCTGTTTTGTGTTTGGTCTGGATCACGACACCACCGATGTGTTTGACCACACGGTGGATCTGGCTATCGATGCCGGGATTGACTTGCCGCGTTTCTCTGTGCTGACACCGTTCCCGGGCACGCCGTTGTTTAAACGCCTTGAGGAAGAGCAGCGGATTTTAACCACGGACTGGTCGCTGTATGACGCGCAACATGTGGTATTCCGCCCGGCGCTGATGAGTGCGCATGAGCTGGAACTGGGTCACGAACGCGCCTGGAAAAAAGTGTACCGTTACCGCAGCATCGCGAAGCGGCTGTGGCAGGCGCGTAACTTTAAACCGCTGGCGCTGACGGCAAACCTGGGTTACCGCTTCTATGCGCATCACCTGCATCAGTATTACACCTGTGACTGGCCGGTTGAACACCGTCCGGCGAAGTCGGGCAGCCACTGATGCGGCTGACATTTATTCATCCGGCGATCGGCCACCGGCGCGGCGAAACC