Homologs in group_2704

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_09615 EHELCC_09615 100.0 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_09995 NLDBIP_09995 100.0 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_07760 LHKJJB_07760 100.0 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_07310 HKOGLL_07310 100.0 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
PMI_RS06035 PMI_RS06035 47.3 Proteus mirabilis HI4320 - helix-turn-helix domain-containing protein

Distribution of the homologs in the orthogroup group_2704

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2704

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P32677 0.000131 46 38 3 83 4 yijO Uncharacterized HTH-type transcriptional regulator YijO Escherichia coli (strain K12)
Q05587 0.00035 45 29 0 79 1 pocR Regulatory protein PocR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_06570
Feature type CDS
Gene araC
Product AraC-type DNA-binding domain and AraC-containing proteins
Location 153541 - 154398 (strand: 1)
Length 858 (nucleotides) / 285 (amino acids)

Contig

Accession contig_6
Length 178871 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2704
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF12833 Helix-turn-helix domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2207 Transcription (K) K AraC-type DNA-binding domain and AraC-containing proteins

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K18954 AraC family transcriptional regulator, transcriptional activator of pobA - -

Protein Sequence

MATHDITLTDQIPVLTEETDTLLTGESTLADHNGVPLTFGNAYLTLMICRAGYAHMSLNFKSQPVRAGDILVLAEDTIALLKKRSRGFRVFFCLIPASFSAEIAYVLPNPLFLHEYPRCIPLPEEKMLLTMWLAQMQDITRNSPVYRHIMQRNHLQNLFLRIAERMPPDAPAATQKYSRKETLCWQFWELICRYSREHRDVQYYARRLNITPFYLSQLTGTFFNHSPKSLINRRVIPEIKTLLRYSTLSVEQIADKLHFDDPSYLCRYFRRETGISLTTYRRQNS

Flanking regions ( +/- flanking 50bp)

GAAAACTATTGTGATAAATTTCCTCTGATATCTGCTTCAGGACGGCAAAAATGGCAACTCACGATATTACACTGACAGATCAGATTCCGGTGCTGACGGAAGAAACAGACACATTACTGACAGGGGAAAGCACACTGGCCGATCACAACGGCGTACCGCTGACCTTCGGAAATGCGTATCTCACCCTGATGATCTGCCGGGCGGGATACGCGCATATGTCACTGAACTTTAAATCTCAGCCTGTACGGGCGGGGGATATTCTGGTGCTGGCGGAAGATACGATCGCGCTGCTGAAAAAGCGTTCGCGGGGATTCCGTGTGTTTTTTTGTCTGATCCCGGCCTCCTTCTCTGCCGAAATCGCCTATGTCCTGCCGAACCCGCTGTTTCTGCATGAATATCCCCGCTGCATTCCGCTGCCGGAAGAAAAAATGCTGCTGACAATGTGGCTGGCACAAATGCAGGATATCACCCGCAACAGTCCGGTTTACCGGCATATTATGCAGCGTAATCATTTACAGAATCTGTTTTTGCGGATAGCGGAAAGAATGCCGCCGGATGCCCCGGCCGCCACACAGAAGTACAGCCGGAAAGAGACACTGTGCTGGCAGTTCTGGGAACTGATCTGCCGCTACAGCCGGGAACACAGGGATGTGCAGTACTATGCACGGCGGTTAAATATCACGCCGTTTTATCTGTCACAGCTGACCGGAACATTTTTCAATCATTCGCCCAAATCACTGATCAACCGCCGGGTTATCCCCGAAATCAAGACACTGCTGCGTTACAGTACGCTGTCAGTAGAGCAGATCGCAGATAAACTGCACTTTGATGACCCGTCCTACCTGTGCCGCTATTTCAGACGGGAAACAGGTATTTCTCTGACAACATACCGGCGGCAGAACAGCTGAGTTATTTTTTGCCGCTGAGGAGTTCCTGCTCCAGCCAGGCTTTCACCTCT