Orthogroup:group_2704


Homologs in group_2704

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_06570 FBDBKF_06570 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
EHELCC_09615 EHELCC_09615 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_09995 NLDBIP_09995 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_07760 LHKJJB_07760 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_07310 HKOGLL_07310 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
PMI_RS06035 PMI_RS06035 Proteus mirabilis HI4320 - helix-turn-helix domain-containing protein

Distribution of group_2704 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_2704 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2704

Orthogroup content: 6 members

Help

This page summarizes the annotation of all members of the orthologous group group_2704.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 araC 5
2 - 1

Product

# Product Occurence
1 AraC-type DNA-binding domain and AraC-containing proteins 5
2 helix-turn-helix domain-containing protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2207 6 K Transcription (K) AraC-type DNA-binding domain and AraC-containing proteins

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K18954 6 AraC family transcriptional regulator, transcriptional activator of pobA - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF12833 6 Helix-turn-helix domain

Annotations of the 2 SwissProt hits

Annotation Number of occurrences
Regulatory protein PocR 1
Uncharacterized HTH-type transcriptional regulator YijO 1

Protein length

Min length 281
Max length 285
Mean length (sd) 284.3 (1.6)
Median length 285.0

Protein length distribution