Biofilm formation - Vibrio cholerae
Help to interpret the results
The page contains two contents:
General: this table lists the KO entries and their description specific to this pathway, and provides their frequencies in Morganella morganii S1 and in the whole dataset.
Profile + homologs: the distribution of the Kegg entries of Biofilm formation - Vibrio cholerae Kegg pathway is displayed here. Given a Kegg entry and a genome, a red box indicates that one or more loci have been annotated with, while a green box indicates that no locus/loci has(have) been annotated with it, but it/they is/are part of an Orthologous group in which other members have been annotated with that Kegg entry, so it is likely that this copy(ies) also performs this Kegg function.
Check the composition of the Biofilm formation - Vibrio cholerae pathway
| KO | Description | #in this genome | All occurrences |
|---|---|---|---|
| K00640 | serine O-acetyltransferase [EC:2.3.1.30] | 1 | 9 |
| K01791 | UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] | 1 | 7 |
| K01912 | phenylacetate-CoA ligase [EC:6.2.1.30] | 0 | 1 |
| K02405 | RNA polymerase sigma factor FliA | 1 | 7 |
| K02452 | general secretion pathway protein C | 0 | 0 |
| K02453 | general secretion pathway protein D | 0 | 0 |
| K02454 | general secretion pathway protein E [EC:7.4.2.8] | 0 | 0 |
| K02455 | general secretion pathway protein F | 0 | 0 |
| K02456 | general secretion pathway protein G | 0 | 0 |
| K02457 | general secretion pathway protein H | 0 | 0 |
| K02458 | general secretion pathway protein I | 0 | 0 |
| K02459 | general secretion pathway protein J | 0 | 0 |
| K02460 | general secretion pathway protein K | 0 | 0 |
| K02461 | general secretion pathway protein L | 0 | 0 |
| K02462 | general secretion pathway protein M | 0 | 0 |
| K02463 | general secretion pathway protein N | 0 | 0 |
| K02472 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] | 1 | 7 |
| K02777 | sugar PTS system EIIA component [EC:2.7.1.-] | 1 | 7 |
| K02779 | glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] | 0 | 0 |
| K03087 | RNA polymerase nonessential primary-like sigma factor | 1 | 7 |
| K03092 | RNA polymerase sigma-54 factor | 1 | 7 |
| K03557 | Fis family transcriptional regulator, factor for inversion stimulation protein | 1 | 7 |
| K03563 | carbon storage regulator | 1 | 7 |
| K03606 | undecaprenyl-phosphate glucose phosphotransferase [EC:2.7.8.31] | 0 | 0 |
| K03666 | host factor-I protein | 1 | 7 |
| K05851 | adenylate cyclase, class 1 [EC:4.6.1.1] | 1 | 7 |
| K07173 | S-ribosylhomocysteine lyase [EC:4.4.1.21] | 1 | 7 |
| K07181 | c-di-GMP phosphodiesterase [EC:3.1.4.52] | 0 | 0 |
| K07678 | two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] | 0 | 0 |
| K07689 | two-component system, NarL family, invasion response regulator UvrY | 0 | 0 |
| K08604 | vibriolysin [EC:3.4.24.25] | 0 | 0 |
| K08720 | outer membrane protein OmpU | 0 | 0 |
| K10909 | two-component system, autoinducer 2 sensor kinase/phosphatase LuxQ [EC:2.7.13.3 3.1.3.-] | 0 | 0 |
| K10910 | autoinducer 2-binding periplasmic protein LuxP | 0 | 0 |
| K10911 | two-component system, phosphorelay protein LuxU | 0 | 0 |
| K10912 | two-component system, repressor protein LuxO | 0 | 0 |
| K10913 | TetR/AcrR family transcriptional regulator, hemagglutinin/protease regulatory protein | 0 | 0 |
| K10914 | CRP/FNR family transcriptional regulator, cyclic AMP receptor protein | 1 | 7 |
| K10915 | CAI-1 autoinducer synthase [EC:2.3.-.-] | 0 | 0 |
| K10916 | two-component system, CAI-1 autoinducer sensor kinase/phosphatase CqsS [EC:2.7.13.3 3.1.3.-] | 0 | 0 |
| K10917 | PadR family transcriptional regulator, regulatory protein AphA | 0 | 0 |
| K10918 | LysR family transcriptional regulator, transcriptional activator AphB | 0 | 0 |
| K10919 | toxin coregulated pilus biosynthesis protein H | 0 | 0 |
| K10920 | toxin coregulated pilus biosynthesis protein P | 0 | 0 |
| K10921 | cholera toxin transcriptional activator | 0 | 0 |
| K10922 | transmembrane regulatory protein ToxS | 0 | 0 |
| K10923 | AraC family transcriptional regulator, TCP pilus virulence regulatory protein | 0 | 0 |
| K10924 | MSHA pilin protein MshA | 0 | 0 |
| K10925 | MSHA pilin protein MshB | 0 | 0 |
| K10926 | MSHA pilin protein MshC | 0 | 0 |
| K10927 | MSHA pilin protein MshD | 0 | 0 |
| K10928 | cholera enterotoxin subunit A [EC:2.4.2.36] | 0 | 0 |
| K10929 | cholera enterotoxin subunit B | 0 | 0 |
| K10930 | toxin coregulated pilin | 0 | 0 |
| K10931 | toxin coregulated pilus biosynthesis protein B | 0 | 0 |
| K10932 | toxin coregulated pilus biosynthesis outer membrane protein C | 0 | 0 |
| K10933 | toxin coregulated pilus biosynthesis protein D | 0 | 0 |
| K10934 | toxin coregulated pilus biosynthesis protein E | 0 | 0 |
| K10935 | toxin coregulated pilus biosynthesis protein F | 0 | 0 |
| K10936 | accessory colonization factor AcfA | 0 | 0 |
| K10937 | accessory colonization factor AcfB | 0 | 0 |
| K10938 | accessory colonization factor AcfC | 0 | 0 |
| K10939 | accessory colonization factor AcfD | 0 | 0 |
| K10940 | outer membrane protein OmpT | 0 | 0 |
| K10941 | sigma-54 dependent transcriptional regulator, flagellar regulatory protein | 0 | 0 |
| K10942 | two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] | 0 | 0 |
| K10943 | two-component system, response regulator FlrC | 0 | 0 |
| K10961 | toxin coregulated pilus biosynthesis protein I | 0 | 0 |
| K10962 | toxin coregulated pilus biosynthesis protein Q | 0 | 0 |
| K10963 | toxin coregulated pilus biosynthesis protein R | 0 | 0 |
| K10964 | toxin coregulated pilus biosynthesis protein S | 0 | 0 |
| K10965 | toxin coregulated pilus biosynthesis protein T | 0 | 0 |
| K12276 | MSHA biogenesis protein MshE | 0 | 0 |
| K13246 | c-di-GMP phosphodiesterase [EC:3.1.4.52] | 0 | 0 |
| K15851 | quorum regulatory RNA Qrr | 0 | 0 |
| K16554 | polysaccharide biosynthesis transport protein [EC:2.7.10.3] | 0 | 0 |
| K18515 | small regulatory RNA CsrB | 0 | 0 |
| K20918 | LuxR family transcriptional regulator, positive regulator of biofilm formation | 0 | 0 |
| K20919 | sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation | 0 | 0 |
| K20920 | polysaccharide biosynthesis protein VpsM | 0 | 0 |
| K20921 | polysaccharide biosynthesis protein VpsD | 0 | 0 |
| K20922 | polysaccharide biosynthesis protein VpsI | 0 | 0 |
| K20945 | tyrosine-protein phosphatase [EC:3.1.3.48] | 0 | 0 |
| K20946 | polysaccharide biosynthesis protein VpsE | 0 | 0 |
| K20947 | polysaccharide biosynthesis protein VpsF | 0 | 0 |
| K20948 | polysaccharide biosynthesis protein VpsJ | 0 | 0 |
| K20949 | polysaccharide biosynthesis protein VpsP | 0 | 0 |
| K20950 | polysaccharide biosynthesis protein VpsQ | 0 | 0 |
| K20951 | extracellular matrix protein | 0 | 0 |
| K20952 | rugosity and biofilm structure modulator C | 0 | 0 |
| K20953 | rugosity and biofilm structure modulator A | 0 | 0 |
| K20954 | diguanylate cyclase [EC:2.7.7.65] | 0 | 0 |
| K20955 | diguanylate cyclase [EC:2.7.7.65] | 0 | 0 |
| K20956 | diguanylate cyclase [EC:2.7.7.65] | 0 | 0 |
| K20957 | diguanylate cyclase [EC:2.7.7.65] | 0 | 0 |
| K20958 | diguanylate cyclase [EC:2.7.7.65] | 0 | 0 |
| K20959 | diguanylate cyclase [EC:2.7.7.65] | 0 | 0 |
| K20960 | diguanylate cyclase [EC:2.7.7.65] | 0 | 0 |
| K20961 | diguanylate cyclase [EC:2.7.7.65] | 0 | 0 |
| K20962 | c-di-GMP phosphodiesterase [EC:3.1.4.52] | 0 | 0 |
| K20963 | c-di-GMP phosphodiesterase [EC:3.1.4.52] | 0 | 0 |
| K20964 | c-di-GMP phosphodiesterase [EC:3.1.4.52] | 0 | 0 |
| K20965 | c-di-GMP phosphodiesterase [EC:3.1.4.52] | 0 | 0 |
| K20966 | c-di-GMP phosphodiesterase [EC:3.1.4.52] | 0 | 0 |
| K20988 | polysaccharide biosynthesis/export protein VpsN | 0 | 0 |
| K25886 | polysaccharide biosynthesis protein VpsK | 0 | 0 |