Homologs in group_29

Help

14 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01365 FBDBKF_01365 42.8 Morganella morganii S1 - Type VI secretion system tube protein Hcp
FBDBKF_01535 FBDBKF_01535 47.2 Morganella morganii S1 - Hcp family type VI secretion system effector
EHELCC_00010 EHELCC_00010 47.2 Morganella morganii S2 - Hcp family type VI secretion system effector
EHELCC_00180 EHELCC_00180 42.8 Morganella morganii S2 - Type VI secretion system tube protein Hcp
NLDBIP_03280 NLDBIP_03280 42.8 Morganella morganii S4 - Type VI secretion system tube protein Hcp
NLDBIP_03450 NLDBIP_03450 47.2 Morganella morganii S4 - Hcp family type VI secretion system effector
LHKJJB_04795 LHKJJB_04795 42.8 Morganella morganii S3 - Type VI secretion system tube protein Hcp
LHKJJB_19860 LHKJJB_19860 47.2 Morganella morganii S3 - Hcp family type VI secretion system effector
HKOGLL_02080 HKOGLL_02080 47.2 Morganella morganii S5 - Hcp family type VI secretion system effector
HKOGLL_02250 HKOGLL_02250 42.8 Morganella morganii S5 - Type VI secretion system tube protein Hcp
F4V73_RS16845 F4V73_RS16845 27.6 Morganella psychrotolerans - Hcp family type VI secretion system effector
F4V73_RS18725 F4V73_RS18725 54.1 Morganella psychrotolerans - Hcp family type VI secretion system effector
PMI_RS03605 PMI_RS03605 52.9 Proteus mirabilis HI4320 - Hcp family type VI secretion system effector
PMI_RS13890 PMI_RS13890 50.3 Proteus mirabilis HI4320 - Hcp family type VI secretion system effector

Distribution of the homologs in the orthogroup group_29

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_29

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P46855 1.31e-19 87 36 4 150 3 yhhZ Uncharacterized protein YhhZ Escherichia coli (strain K12)
Q9HI36 1.45e-19 83 30 4 165 1 hcpA Major exported protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P80693 2.86e-06 45 40 0 40 1 None Major exported protein (Fragment) Pseudomonas syringae pv. ribicola

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS17415
Feature type CDS
Gene -
Product Hcp family type VI secretion system effector
Location 114260 - 114739 (strand: -1)
Length 480 (nucleotides) / 159 (amino acids)

Contig

Accession term accessions NZ_VXKB01000007 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 196482 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_29
Orthogroup size 15
N. genomes 7

Actions

Genomic region

Domains

PF05638 Type VI secretion system effector, Hcp

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06887 uncharacterized protein - -

Protein Sequence

MANLIYLTLKGRKQGVISSGCSSYNSIGNKYQENHKDQILIYSTNYDLVRKQNVSHAPFKIVKADDKSSALLLSCISNNEILDCEFDYYRIDQQGMLTLYKKIKLTKASIVRISNESPSSLTENEIQPFETVSLIYESITYLHISASTSGYSIRDEAIR

Flanking regions ( +/- flanking 50bp)

TGTTTCCACATGAGCGGATTAATTGACTTGCATTATAAAAAGGATTTTATATGGCTAATCTTATTTACCTGACGTTAAAGGGGCGTAAGCAAGGGGTTATTTCATCTGGTTGTTCAAGTTATAATTCTATTGGTAATAAATATCAAGAAAACCATAAGGATCAAATTTTAATTTATTCTACAAATTATGATTTAGTACGTAAGCAAAATGTATCTCATGCGCCATTTAAAATAGTAAAAGCTGATGATAAATCGTCTGCACTATTACTTTCCTGTATATCAAATAACGAAATTTTAGATTGTGAATTCGATTATTACCGTATTGACCAACAGGGAATGTTAACACTTTATAAAAAAATAAAATTAACTAAAGCATCAATTGTTCGTATATCTAATGAATCACCAAGCTCACTAACCGAAAATGAGATACAACCATTTGAAACAGTATCACTGATATATGAAAGTATCACCTATTTACATATTAGTGCGAGTACCTCCGGGTATAGTATCAGAGACGAAGCAATCAGGTGATAATAATGAAAGTGAATGATGTCTATCATAATCGGTTTAATGTTCCCGTT