Homologs in group_3648

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4 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS17030 F4V73_RS17030 35.7 Morganella psychrotolerans - MerR family transcriptional regulator
PMI_RS10150 PMI_RS10150 62.2 Proteus mirabilis HI4320 cueR Cu(I)-responsive transcriptional regulator
PMI_RS13330 PMI_RS13330 23.5 Proteus mirabilis HI4320 soxR redox-sensitive transcriptional activator SoxR
PMI_RS18275 PMI_RS18275 23.9 Proteus mirabilis HI4320 - MerR family transcriptional regulator

Distribution of the homologs in the orthogroup group_3648

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3648

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9X5X4 3.5e-50 160 51 1 144 1 hmrR HTH-type transcriptional regulator HmrR Sinorhizobium medicae (strain WSM419)
P58379 2.67e-49 158 50 1 144 3 hmrR2 Heavy metal-dependent transcription regulator 2 Rhizobium meliloti (strain 1021)
P58378 8.48e-47 151 50 3 147 3 hmrR1 Heavy metal-dependent transcription regulator 1 Rhizobium meliloti (strain 1021)
Q9HV30 5.97e-43 141 50 0 127 3 PA4778 Uncharacterized HTH-type transcriptional regulator PA4778 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9X5V4 3.63e-37 126 44 1 128 4 hmrR HTH-type transcriptional regulator HmrR Rhizobium leguminosarum bv. viciae
P44617 2.35e-32 114 45 0 126 3 HI_0293 Probable heavy metal-dependent transcriptional regulator HI_0293 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0C6D2 7.84e-30 108 45 0 126 3 cueR HTH-type transcriptional regulator CueR Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A5F2W6 7.84e-30 108 45 0 126 3 cueR HTH-type transcriptional regulator CueR Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Q93CH6 6.42e-28 103 38 0 127 1 cueR HTH-type transcriptional regulator CueR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8XD09 7.58e-28 103 38 0 127 3 cueR HTH-type transcriptional regulator CueR Escherichia coli O157:H7
P0A9G5 8.63e-28 103 38 0 127 3 cueR HTH-type transcriptional regulator CueR Shigella flexneri
P0A9G4 8.63e-28 103 38 0 127 1 cueR HTH-type transcriptional regulator CueR Escherichia coli (strain K12)
Q8FK74 1.06e-27 102 38 0 127 3 cueR HTH-type transcriptional regulator CueR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8Z8S3 1.36e-27 102 37 0 127 3 cueR HTH-type transcriptional regulator CueR Salmonella typhi
Q8ZCA8 1.47e-27 102 38 0 126 3 cueR HTH-type transcriptional regulator CueR Yersinia pestis
P22853 3.46e-21 86 34 3 128 1 merR1 Mercuric resistance operon regulatory protein Bacillus cereus
P0ACS5 1.2e-18 79 34 2 129 1 zntR HTH-type transcriptional regulator ZntR Escherichia coli (strain K12)
P0ACS6 1.2e-18 79 34 2 129 3 zntR HTH-type transcriptional regulator ZntR Escherichia coli O157:H7
P13111 1.4e-16 74 32 2 127 4 merR Mercuric resistance operon regulatory protein Serratia marcescens
P22896 6.97e-16 72 35 0 114 4 merR Mercuric resistance operon regulatory protein (Fragment) Acidithiobacillus ferrooxidans
P22874 1.84e-14 68 29 2 132 4 merR Mercuric resistance operon regulatory protein Staphylococcus aureus
P0A2Q9 3.61e-14 68 30 2 127 4 merR Mercuric resistance operon regulatory protein Shigella flexneri
P0A2Q8 3.61e-14 68 30 2 127 3 merR Mercuric resistance operon regulatory protein Salmonella typhi
P69413 8.73e-14 67 30 2 127 3 merR Mercuric resistance operon regulatory protein Pseudomonas sp.
P0A184 8.73e-14 67 30 2 127 3 merR Mercuric resistance operon regulatory protein Pseudomonas fluorescens
P0A183 8.73e-14 67 30 2 127 1 merR Mercuric resistance operon regulatory protein Pseudomonas aeruginosa
O06008 1.84e-12 63 31 0 115 1 adhR HTH-type transcriptional regulator AdhR Bacillus subtilis (strain 168)
P45277 3.91e-12 62 29 0 117 3 zntR HTH-type transcriptional regulator ZntR homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0A4T9 2.09e-11 62 32 1 106 1 tipA HTH-type transcriptional activator TipA Streptomyces lividans
P0A4T8 2.09e-11 62 32 1 106 3 tipA HTH-type transcriptional activator TipA Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Q55963 5.23e-11 59 24 1 128 4 slr0701 Uncharacterized HTH-type transcriptional regulator slr0701 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
O06474 2.48e-09 55 33 3 103 2 yfmP HTH-type transcriptional regulator YfmP Bacillus subtilis (strain 168)
P50329 7.18e-09 55 37 0 62 4 nolA Nodulation protein NolA (Fragment) Bradyrhizobium elkanii
P50330 4.07e-08 53 36 0 61 4 nolA Nodulation protein NolA Bradyrhizobium sp. (strain NC92)
P37510 4.56e-08 52 28 2 115 4 yyaN Uncharacterized HTH-type transcriptional regulator YyaN Bacillus subtilis (strain 168)
P22537 1.26e-06 49 34 0 61 2 nolA Nodulation protein NolA Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
P39842 3.05e-06 48 27 2 103 4 bltR Multidrug-efflux transporter 2 regulator Bacillus subtilis (strain 168)
Q45666 2.71e-05 44 39 1 63 1 tnrA HTH-type transcriptional regulator TnrA Bacillus subtilis (strain 168)
G2RUZ1 3.28e-05 43 35 2 85 1 tnrA HTH-type transcriptional regulator TnrA Priestia megaterium (strain WSH-002)
P71039 5.12e-05 45 25 1 105 1 mta HTH-type transcriptional activator mta Bacillus subtilis (strain 168)
P96690 0.000186 43 28 4 114 4 ydfL Uncharacterized HTH-type transcriptional regulator YdfL Bacillus subtilis (strain 168)
P44558 0.000242 42 31 0 60 1 HI_0186 Uncharacterized HTH-type transcriptional regulator HI_0186 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P39075 0.000621 42 36 1 57 1 bmrR Multidrug-efflux transporter 1 regulator Bacillus subtilis (strain 168)
P37582 0.000731 40 36 1 65 1 glnR HTH-type transcriptional regulator GlnR Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS17005
Feature type CDS
Gene cueR
Product Cu(I)-responsive transcriptional regulator
Location 24047 - 24493 (strand: -1)
Length 447 (nucleotides) / 148 (amino acids)

Contig

Accession term accessions NZ_VXKB01000007 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 196482 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3648
Orthogroup size 5
N. genomes 2

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Genomic region

Domains

PF13411 MerR HTH family regulatory protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0789 Transcription (K) K DNA-binding transcriptional regulator, MerR family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K19591 MerR family transcriptional regulator, copper efflux regulator - Multidrug resistance, efflux pump MexPQ-OpmE

Protein Sequence

MNIGQAAKLANISAKMIRYYEQTGLIPKANRSDSGYRRYSLSDVESFHLIRRARDLGFSTDQISALLLLWRDSDRTSANVKEMALTHLSELKKKITELQDMAQTLEQLTQHCSGNNQPDCPIITSLTEPVMNTEKNTSRSTRFGRRLN

Flanking regions ( +/- flanking 50bp)

CCTTAAGGTAAAGCTTAGGCTCTGACTTAATAATTTATTGGGGGGACATTATGAATATCGGTCAGGCGGCTAAACTCGCTAATATCTCAGCAAAGATGATTCGTTATTACGAACAGACCGGTTTAATTCCGAAAGCAAATCGCTCTGATTCAGGATACCGGCGTTATAGTTTATCGGATGTGGAAAGTTTTCATCTTATCCGTCGTGCCCGCGATCTTGGTTTTTCTACAGATCAAATCTCTGCACTTTTACTCTTATGGCGCGACAGTGACCGCACCAGCGCAAATGTCAAAGAGATGGCACTTACTCACCTGTCTGAATTAAAAAAGAAAATCACAGAACTACAGGATATGGCTCAAACACTTGAGCAACTGACTCAACATTGCAGCGGTAATAATCAGCCGGACTGCCCGATTATAACAAGCTTAACTGAACCGGTTATGAATACTGAGAAGAATACATCGCGGAGCACCCGGTTTGGTCGTCGTCTTAATTAAAAACCAGTTGACCTTACTATGCTGGTAAGCCTTACCTTAATTATGAAATT