Homologs in group_3648

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4 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS17005 F4V73_RS17005 23.9 Morganella psychrotolerans cueR Cu(I)-responsive transcriptional regulator
F4V73_RS17030 F4V73_RS17030 24.6 Morganella psychrotolerans - MerR family transcriptional regulator
PMI_RS10150 PMI_RS10150 27.9 Proteus mirabilis HI4320 cueR Cu(I)-responsive transcriptional regulator
PMI_RS13330 PMI_RS13330 30.1 Proteus mirabilis HI4320 soxR redox-sensitive transcriptional activator SoxR

Distribution of the homologs in the orthogroup group_3648

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3648

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P10488 5.92e-25 103 28 6 223 4 None Albicidin resistance protein Klebsiella oxytoca
P50330 2.01e-18 86 39 1 102 4 nolA Nodulation protein NolA Bradyrhizobium sp. (strain NC92)
P71039 3.12e-17 83 25 4 231 1 mta HTH-type transcriptional activator mta Bacillus subtilis (strain 168)
P0A4T9 4.09e-17 83 25 6 247 1 tipA HTH-type transcriptional activator TipA Streptomyces lividans
P0A4T8 4.09e-17 83 25 6 247 3 tipA HTH-type transcriptional activator TipA Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P50329 5.11e-17 82 40 1 99 4 nolA Nodulation protein NolA (Fragment) Bradyrhizobium elkanii
P22537 1.94e-15 78 39 1 100 2 nolA Nodulation protein NolA Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
Q93CH6 8.42e-14 70 32 1 105 1 cueR HTH-type transcriptional regulator CueR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8Z8S3 9.78e-14 70 32 1 105 3 cueR HTH-type transcriptional regulator CueR Salmonella typhi
B8H172 1.37e-12 70 36 0 96 3 skgA HTH-type transcriptional regulator SkgA Caulobacter vibrioides (strain NA1000 / CB15N)
P0CAV4 1.37e-12 70 36 0 96 1 skgA HTH-type transcriptional regulator SkgA Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15)
Q9HV30 1.68e-12 67 30 2 122 3 PA4778 Uncharacterized HTH-type transcriptional regulator PA4778 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q8XD09 3.72e-12 66 30 1 105 3 cueR HTH-type transcriptional regulator CueR Escherichia coli O157:H7
Q8FK74 4.23e-12 66 30 1 105 3 cueR HTH-type transcriptional regulator CueR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9G5 6.09e-12 65 30 1 105 3 cueR HTH-type transcriptional regulator CueR Shigella flexneri
P0A9G4 6.09e-12 65 30 1 105 1 cueR HTH-type transcriptional regulator CueR Escherichia coli (strain K12)
Q8ZCA8 1.17e-11 65 32 1 105 3 cueR HTH-type transcriptional regulator CueR Yersinia pestis
P45277 3.88e-11 63 31 1 105 3 zntR HTH-type transcriptional regulator ZntR homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P37510 8.22e-10 59 31 2 115 4 yyaN Uncharacterized HTH-type transcriptional regulator YyaN Bacillus subtilis (strain 168)
P44617 8.86e-10 59 30 1 107 3 HI_0293 Probable heavy metal-dependent transcriptional regulator HI_0293 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P22853 9.87e-10 59 36 0 69 1 merR1 Mercuric resistance operon regulatory protein Bacillus cereus
P22896 1.05e-09 58 31 0 94 4 merR Mercuric resistance operon regulatory protein (Fragment) Acidithiobacillus ferrooxidans
P0C6D2 1.28e-08 56 28 1 107 3 cueR HTH-type transcriptional regulator CueR Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A5F2W6 1.28e-08 56 28 1 107 3 cueR HTH-type transcriptional regulator CueR Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
O06474 2.01e-08 55 29 4 124 2 yfmP HTH-type transcriptional regulator YfmP Bacillus subtilis (strain 168)
P39842 2.8e-08 57 28 1 97 4 bltR Multidrug-efflux transporter 2 regulator Bacillus subtilis (strain 168)
Q9X5V4 2.86e-08 55 25 2 108 4 hmrR HTH-type transcriptional regulator HmrR Rhizobium leguminosarum bv. viciae
Q55963 1.33e-07 53 30 1 110 4 slr0701 Uncharacterized HTH-type transcriptional regulator slr0701 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P58379 1.61e-07 53 25 1 108 3 hmrR2 Heavy metal-dependent transcription regulator 2 Rhizobium meliloti (strain 1021)
Q9X5X4 3.66e-07 52 25 2 118 1 hmrR HTH-type transcriptional regulator HmrR Sinorhizobium medicae (strain WSM419)
P0ACS5 4.49e-07 52 25 4 134 1 zntR HTH-type transcriptional regulator ZntR Escherichia coli (strain K12)
P0ACS6 4.49e-07 52 25 4 134 3 zntR HTH-type transcriptional regulator ZntR Escherichia coli O157:H7
P96690 1.02e-06 53 26 2 108 4 ydfL Uncharacterized HTH-type transcriptional regulator YdfL Bacillus subtilis (strain 168)
O06008 1.95e-06 50 36 0 60 1 adhR HTH-type transcriptional regulator AdhR Bacillus subtilis (strain 168)
P44558 3.38e-06 49 30 3 116 1 HI_0186 Uncharacterized HTH-type transcriptional regulator HI_0186 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O07586 7.26e-06 48 30 2 106 4 cueR HTH-type transcriptional regulator CueR Bacillus subtilis (strain 168)
P58378 7.87e-06 48 25 2 109 3 hmrR1 Heavy metal-dependent transcription regulator 1 Rhizobium meliloti (strain 1021)
P37582 2.8e-05 46 35 1 74 1 glnR HTH-type transcriptional regulator GlnR Bacillus subtilis (strain 168)
P22874 4.98e-05 46 30 1 71 4 merR Mercuric resistance operon regulatory protein Staphylococcus aureus
P08654 0.000131 44 25 1 106 4 merD HTH-type transcriptional regulator MerD Serratia marcescens
P0A2Q6 0.000183 43 27 2 106 4 merD HTH-type transcriptional regulator MerD Salmonella typhi
P0A2Q7 0.000183 43 27 2 106 4 merD HTH-type transcriptional regulator MerD Enterobacter agglomerans
Q51506 0.000188 44 27 2 107 3 soxR Redox-sensitive transcriptional activator SoxR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q52110 0.000223 43 27 2 106 4 merD HTH-type transcriptional regulator MerD Acinetobacter calcoaceticus
Q45666 0.000511 42 35 1 64 1 tnrA HTH-type transcriptional regulator TnrA Bacillus subtilis (strain 168)
P62174 0.000639 42 29 3 104 3 glnR HTH-type transcriptional regulator GlnR Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
P62173 0.000639 42 29 3 104 1 glnR HTH-type transcriptional regulator GlnR Bacillus cereus
P62172 0.000639 42 29 3 104 3 glnR HTH-type transcriptional regulator GlnR Bacillus anthracis

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS18275
Feature type CDS
Gene -
Product MerR family transcriptional regulator
Location 4007785 - 4008810 (strand: -1)
Length 1026 (nucleotides) / 341 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_3648
Orthogroup size 5
N. genomes 2

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Genomic region

Domains

PF07739 TipAS antibiotic-recognition domain
PF13411 MerR HTH family regulatory protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0789 Transcription (K) K DNA-binding transcriptional regulator, MerR family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K21744 MerR family transcriptional regulator, thiopeptide resistance regulator - -

Protein Sequence

MLFQVGEIAKKTGLTVRTLHHYEEIGLLQPTARTDAGYRLYDMKSIERLTQIQMLRQIGVKLKDIGHILNGHSAEIACLIEERISQLTTQMQQIAKLRYQLEHVQQQIQTGTPFTQHDWFSLLEMMSMYDKYFTYSELAQLPLYTAHTLKSQAWQQRISTVNNLIKQGKSADSNEAMQVSREWMIALEQDTGGNPDFFVRLNKMHISDDKFATATGITKQMIDFVAKGFSEYQLSVFKPHLTPEQFAVVHQHYFDAGSVWPELISGLYNALTCGEKADSEQVQNLAKMWLNMFNQFTQGDSDIQAKIRTIYQTDHEIAKGTWMTPEIGQYLFTAISLLVQK

Flanking regions ( +/- flanking 50bp)

CCTTACGTTACGTGAGGTTTTAACCTGCATGACATACAGGAGGTGAAGATATGCTATTTCAAGTAGGAGAGATCGCTAAAAAGACGGGATTAACGGTCCGTACTCTCCATCATTATGAAGAGATAGGTTTATTGCAACCGACTGCAAGAACCGATGCAGGTTATCGACTCTATGATATGAAAAGCATAGAGCGATTAACGCAAATTCAAATGCTACGTCAAATTGGCGTCAAACTGAAAGACATCGGTCATATTCTTAATGGTCATAGTGCAGAGATAGCTTGTTTAATTGAAGAGCGCATTAGCCAATTAACCACGCAAATGCAACAAATTGCCAAATTGCGTTATCAGCTAGAGCATGTTCAACAACAAATACAAACAGGCACTCCATTTACGCAACATGACTGGTTTTCTTTATTGGAGATGATGTCTATGTACGATAAATATTTTACTTATTCTGAATTAGCGCAGTTACCCCTCTATACTGCGCACACATTAAAAAGCCAAGCATGGCAACAGCGTATTTCAACTGTCAATAATTTGATTAAACAAGGTAAATCTGCCGATTCAAATGAAGCCATGCAAGTTTCAAGAGAGTGGATGATAGCTTTAGAGCAAGATACTGGGGGAAATCCCGACTTTTTTGTCCGTTTAAATAAAATGCATATTTCTGATGATAAGTTTGCGACGGCTACCGGTATTACTAAACAGATGATAGATTTTGTTGCTAAAGGCTTTAGCGAATATCAATTATCTGTTTTTAAACCTCATCTGACTCCGGAACAATTTGCCGTAGTACATCAGCACTATTTTGATGCTGGCAGTGTCTGGCCTGAGCTTATTTCTGGATTATATAATGCACTCACTTGCGGAGAAAAAGCAGATTCAGAGCAGGTGCAAAACCTCGCTAAGATGTGGCTAAATATGTTCAATCAGTTTACACAGGGTGATAGTGATATTCAGGCCAAGATCCGTACCATTTATCAAACTGATCATGAAATCGCTAAAGGTACATGGATGACACCTGAGATTGGTCAATATTTATTTACGGCTATTAGTTTGCTAGTGCAAAAATAGCGTTAATTGAAAAATCAAATAGATATAAAAAAAGCCCAGTATTTAACTGG