Homologs in group_3684

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3 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS00065 F4V73_RS00065 23.7 Morganella psychrotolerans vgrG type VI secretion system tip protein VgrG
F4V73_RS06965 F4V73_RS06965 21.5 Morganella psychrotolerans tssI type VI secretion system tip protein TssI/VgrG
F4V73_RS09330 F4V73_RS09330 21.8 Morganella psychrotolerans tssI type VI secretion system tip protein TssI/VgrG

Distribution of the homologs in the orthogroup group_3684

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3684

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9I3K1 1.24e-59 220 27 28 786 3 vgrG2a Type VI secretion system spike protein VgrG2a Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I6M7 2.26e-59 221 27 28 786 1 vgrG2b Type VI secretion system spike protein VgrG2b Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9HYC3 2.32e-35 147 27 17 532 3 vgrG4b Type VI secretion system spike protein VgrG4b Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I737 1.8e-31 135 24 31 775 3 vgrG1b Type VI secretion system spike protein VgrG1b Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9KNE7 3.14e-30 131 26 23 536 3 vgrG2 Type VI secretion system spike protein VgrG2 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A0KJB0 7.79e-30 130 26 22 541 1 vgrG1 Type VI secretion system spike protein VgrG1 Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)
Q9HU93 7.88e-29 127 25 21 614 3 vgrG5 Type VI secretion system spike protein VgrG5 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
A0A0H3AIG7 1.13e-28 127 26 23 533 1 vgrG1 Actin cross-linking toxin VgrG1 Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Q9KS45 1.41e-28 127 26 23 533 1 vgrG1 Actin cross-linking toxin VgrG1 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q9I741 3.04e-28 124 26 20 536 1 vgrG1a Type VI secretion system spike protein VgrG1a Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q0PZH5 7.44e-28 123 26 21 540 3 vgrG2 Type VI secretion system spike protein VgrG2 Aeromonas hydrophila
K7WKL8 4.16e-27 121 26 22 541 1 vgrG1 Type VI secretion system spike protein VgrG1 Aeromonas hydrophila
Q9I0F3 9.7e-27 120 24 18 524 1 vgrG1c Type VI secretion system spike protein VgrG1c Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9KN42 1.19e-26 120 26 24 538 1 vgrG3 Type VI secretion system spike protein VgrG3 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
E0SAL0 1.1e-25 116 28 20 455 3 vgrGA Putative type VI secretion system protein VgrGA Dickeya dadantii (strain 3937)
Q0PZF7 5.04e-25 114 26 20 486 3 vgrG3 Type VI secretion system spike protein VgrG3 Aeromonas hydrophila
E0SIS4 2.05e-24 112 27 19 453 3 vgrGB Putative type VI secretion system protein VgrGB Dickeya dadantii (strain 3937)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS16810
Feature type CDS
Gene vgrG
Product type VI secretion system Vgr family protein
Location 187271 - 189664 (strand: -1)
Length 2394 (nucleotides) / 797 (amino acids)

Contig

Accession term accessions NZ_VXKB01000006 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 212134 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3684
Orthogroup size 4
N. genomes 1

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Genomic region

Domains

PF04717 Type VI secretion system/phage-baseplate injector OB domain
PF05954 Phage tail baseplate hub (GPD)
PF10106 Uncharacterized protein conserved in bacteria (DUF2345)
PF13296 Putative type VI secretion system Rhs element Vgr

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3501 Intracellular trafficking, secretion, and vesicular transport (U)
Mobilome: prophages, transposons (X)
General function prediction only (R)		 UXR Uncharacterized conserved protein VgrG, implicated in type VI secretion and phage assembly

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11904 type VI secretion system secreted protein VgrG Bacterial secretion system -

Protein Sequence

MNINLSDIKTSLLSGQNRYQLTVRGCDIPLDVEYFTGREAVSDTYRYQVTFTSAANDLTVQQLLRRSATLSFAPPFTMTGAAGVAKRVHGMITDFRRLSGSADEARYQIIIEPFFALLRHQIRSHRFFLNQSVPDVVAHIFREHNFKDWEFEFNLKNEYPKREQINQINESDRQFIERLLSEAGIFYYFSLQDDTQTEVIHFGDRQSNYLADKFLPLNSPSGMSDNSADSVWGLSLRHQVVEHQVQTKDYNHRQAQDLLLSSPADMMRGDSDENHYGEVYHYRARHLTSGDKLKPDAETGNFWARLDHERFLARQTLLRGQSTAADLTPLQVLTIKESGVLSTLPGVFQSPVVITRLRFSGGRDKALNVRFDAVPYSETVCWRPALKPRPVIAGTLMARVTSAKDNDIYAHQNEDGFYWVKFDADLDDKAPGYESMPVRLAKPYAGDTYGMHFPLIQGTEVAIAFHEGDPDRPYIAHALHDSRHPDHVTSDNNTRNVIRTPANNKLRMEDKRGEEHIKLSTEYGGKSQLNLGHLVNQGREKRGEGFELRTDSWGAIRAGKGLFISADTQQRGGGDVLAMKDAVALIDSGIDQIADWEDVTQSHKNRQPDRQSLTEFRDKANELASPAILIHAPEGVGIVTDETLLMQSTGALYQQTRDEMHLAASKEIALNAKKNISLLAQQEGIRMVSGKGPFELESHGDGLDITALKDVIIQSTQGHLQITAKNGITLGCGGGYIKILPDGQIEIHTPSRLSLKGQHVWNTPAGEDFPLPDLPQSVCKECLALAQKNAAGVAIRE

Flanking regions ( +/- flanking 50bp)

TGTACGGAATTATCTGTCATTAAATCCGGAAAACAGGAAGCCTTTATATTATGAATATAAATCTGTCCGATATTAAAACGTCTCTGCTCAGTGGTCAGAACCGCTATCAACTGACTGTCCGCGGGTGTGATATCCCGCTGGATGTTGAGTATTTCACCGGGCGCGAAGCCGTCAGTGATACTTACCGTTATCAGGTCACATTTACCAGTGCCGCGAATGACCTGACTGTGCAGCAATTATTACGCCGCTCAGCCACACTCTCTTTTGCGCCGCCCTTTACTATGACAGGTGCCGCCGGTGTGGCAAAACGCGTTCACGGAATGATAACGGATTTCCGCCGTCTTTCAGGCTCGGCGGATGAAGCCCGTTATCAGATTATAATCGAACCGTTTTTTGCTTTGCTGCGTCATCAAATCCGCTCTCACCGTTTTTTCCTTAACCAATCTGTTCCGGATGTGGTTGCCCATATTTTCCGGGAACATAATTTTAAGGACTGGGAATTTGAATTTAATCTGAAAAATGAATACCCGAAGCGGGAGCAGATTAATCAAATCAATGAAAGTGACAGGCAATTTATTGAACGCCTGCTCAGTGAAGCCGGTATTTTCTATTATTTCAGTTTGCAGGATGACACTCAGACTGAGGTTATTCATTTCGGGGACAGACAAAGCAACTATCTGGCAGATAAATTCCTGCCGCTCAACAGCCCGTCAGGCATGAGTGACAACAGCGCTGACAGTGTCTGGGGGCTTTCACTGCGCCATCAGGTCGTTGAACACCAGGTTCAGACCAAAGATTACAATCACCGTCAGGCACAGGATTTACTGCTTTCCTCACCTGCGGATATGATGCGCGGTGACAGTGACGAAAACCACTATGGTGAGGTGTATCACTACCGGGCGCGGCACCTGACCAGCGGCGATAAACTGAAACCGGATGCGGAAACCGGTAACTTCTGGGCGCGTCTTGACCATGAACGTTTCCTTGCGCGGCAAACATTACTGCGCGGGCAAAGTACGGCGGCAGACCTGACCCCGCTTCAGGTACTGACTATCAAAGAAAGCGGTGTGTTATCCACATTGCCGGGGGTTTTTCAGTCTCCGGTGGTTATCACGCGGTTACGGTTCAGCGGCGGACGCGATAAAGCCCTGAATGTGCGTTTTGATGCAGTGCCGTACAGTGAAACCGTATGCTGGCGACCGGCTCTGAAGCCACGCCCGGTGATCGCCGGAACACTGATGGCACGCGTCACCAGTGCGAAAGATAATGATATTTATGCCCATCAGAATGAAGATGGCTTCTATTGGGTCAAATTTGATGCCGACCTCGATGATAAAGCGCCGGGCTATGAAAGTATGCCGGTGCGCCTCGCCAAACCCTATGCCGGTGATACTTACGGCATGCACTTTCCGCTGATTCAGGGAACCGAGGTGGCGATAGCGTTTCATGAAGGTGATCCTGACCGCCCGTATATTGCCCATGCGCTGCATGACTCGCGGCATCCCGACCATGTGACTTCAGATAATAATACCCGCAATGTTATCCGTACACCGGCTAATAATAAGCTGCGTATGGAAGATAAGCGGGGTGAGGAACATATCAAGCTCAGCACTGAGTACGGCGGAAAATCACAGCTTAATTTAGGTCATCTTGTTAATCAGGGCAGAGAAAAACGCGGTGAAGGGTTTGAACTGCGGACGGACAGTTGGGGTGCTATCCGGGCGGGTAAGGGATTGTTTATCAGTGCCGATACCCAGCAACGTGGCGGAGGGGATGTACTGGCAATGAAAGACGCGGTTGCGTTGATTGATAGTGGTATTGACCAGATAGCTGACTGGGAAGACGTTACTCAATCACATAAAAACAGACAACCGGATCGGCAAAGCCTGACTGAATTCAGAGATAAAGCAAATGAACTCGCTTCCCCGGCTATTTTGATTCATGCCCCTGAAGGGGTCGGAATTGTGACGGATGAAACATTGCTGATGCAAAGTACAGGTGCGCTTTATCAGCAAACCCGTGATGAAATGCATCTGGCGGCATCAAAGGAAATAGCGCTGAATGCGAAGAAAAATATATCACTCCTGGCGCAACAGGAAGGTATACGGATGGTTTCAGGTAAAGGACCATTTGAACTGGAATCACACGGCGACGGCCTGGATATCACGGCATTAAAGGATGTGATTATTCAGTCAACTCAGGGACATTTGCAAATTACAGCAAAAAACGGGATCACATTAGGATGCGGCGGAGGATATATAAAGATTTTGCCGGATGGTCAGATTGAAATCCATACCCCGAGCCGTTTAAGTCTGAAAGGGCAGCATGTCTGGAATACACCGGCGGGAGAAGATTTCCCTTTACCGGATCTTCCGCAGTCAGTCTGTAAAGAGTGCCTCGCACTGGCACAAAAAAATGCCGCAGGAGTTGCTATCCGTGAATAATATAACAATGAATTTAACGTGTGACACCGCATTGCAATGGATTGAACAAT