Homologs in group_5

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21 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05895 FBDBKF_05895 94.8 Morganella morganii S1 metQ ABC-type metal ion transport system, periplasmic component/surface antigen
FBDBKF_09265 FBDBKF_09265 51.7 Morganella morganii S1 metQ ABC-type metal ion transport system, periplasmic component/surface antigen
FBDBKF_19935 FBDBKF_19935 57.7 Morganella morganii S1 nlpA lipoprotein NlpA
EHELCC_07680 EHELCC_07680 57.7 Morganella morganii S2 nlpA lipoprotein NlpA
EHELCC_08940 EHELCC_08940 94.8 Morganella morganii S2 metQ ABC-type metal ion transport system, periplasmic component/surface antigen
EHELCC_10145 EHELCC_10145 51.7 Morganella morganii S2 metQ ABC-type metal ion transport system, periplasmic component/surface antigen
NLDBIP_08005 NLDBIP_08005 57.7 Morganella morganii S4 nlpA lipoprotein NlpA
NLDBIP_09320 NLDBIP_09320 94.8 Morganella morganii S4 metQ ABC-type metal ion transport system, periplasmic component/surface antigen
NLDBIP_10490 NLDBIP_10490 51.7 Morganella morganii S4 metQ ABC-type metal ion transport system, periplasmic component/surface antigen
LHKJJB_06260 LHKJJB_06260 57.7 Morganella morganii S3 nlpA lipoprotein NlpA
LHKJJB_08435 LHKJJB_08435 94.8 Morganella morganii S3 metQ ABC-type metal ion transport system, periplasmic component/surface antigen
LHKJJB_10865 LHKJJB_10865 51.7 Morganella morganii S3 metQ ABC-type metal ion transport system, periplasmic component/surface antigen
HKOGLL_07985 HKOGLL_07985 94.8 Morganella morganii S5 metQ ABC-type metal ion transport system, periplasmic component/surface antigen
HKOGLL_13925 HKOGLL_13925 51.7 Morganella morganii S5 metQ ABC-type metal ion transport system, periplasmic component/surface antigen
HKOGLL_19115 HKOGLL_19115 57.7 Morganella morganii S5 nlpA lipoprotein NlpA
F4V73_RS02430 F4V73_RS02430 57.7 Morganella psychrotolerans nlpA lipoprotein NlpA
F4V73_RS10700 F4V73_RS10700 49.8 Morganella psychrotolerans - MetQ/NlpA family lipoprotein
PMI_RS06020 PMI_RS06020 41.4 Proteus mirabilis HI4320 - MetQ/NlpA family lipoprotein
PMI_RS06360 PMI_RS06360 56.1 Proteus mirabilis HI4320 - MetQ/NlpA family lipoprotein
PMI_RS11165 PMI_RS11165 76.4 Proteus mirabilis HI4320 - MetQ/NlpA family lipoprotein
PMI_RS14940 PMI_RS14940 51.3 Proteus mirabilis HI4320 - MetQ/NlpA family ABC transporter substrate-binding protein

Distribution of the homologs in the orthogroup group_5

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_5

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P28635 8.41e-167 465 83 0 271 1 metQ D-methionine-binding lipoprotein MetQ Escherichia coli (strain K12)
Q8X8V9 3.13e-166 464 82 0 271 3 metQ D-methionine-binding lipoprotein MetQ Escherichia coli O157:H7
Q8ZRN1 5.72e-165 460 81 0 271 3 metQ D-methionine-binding lipoprotein MetQ Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8Z992 3.73e-164 458 81 0 271 3 metQ D-methionine-binding lipoprotein MetQ Salmonella typhi
Q8ZH40 3.77e-162 453 81 0 271 3 metQ D-methionine-binding lipoprotein MetQ Yersinia pestis
P04846 1.91e-116 338 62 0 249 1 nlpA Lipoprotein 28 Escherichia coli (strain K12)
Q8XC50 5.58e-116 337 62 0 249 3 nlpA Lipoprotein 28 Escherichia coli O157:H7
Q9KTJ7 1.51e-112 328 67 1 271 3 metQ Probable D-methionine-binding lipoprotein MetQ Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P31728 2.24e-110 322 58 3 275 1 metQ Probable D-methionine-binding lipoprotein MetQ Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q08870 8.43e-109 318 59 4 268 3 plpC Outer membrane lipoprotein 3 Mannheimia haemolytica
Q9CK95 2.27e-107 315 55 2 278 3 metQ Probable D-methionine-binding lipoprotein MetQ Pasteurella multocida (strain Pm70)
Q08868 1.56e-98 292 51 4 282 3 plpA Outer membrane lipoprotein 1 Mannheimia haemolytica
Q08869 4.13e-88 266 52 3 270 3 plpB Outer membrane lipoprotein 2 Mannheimia haemolytica
O07950 5.61e-46 158 34 5 269 1 tpn32 Membrane lipoprotein TpN32 Treponema pallidum (strain Nichols)
O32167 2.74e-40 143 36 8 266 1 metQ Methionine-binding lipoprotein MetQ Bacillus subtilis (strain 168)
P54594 1.68e-27 110 28 5 270 3 yhcJ Uncharacterized lipoprotein YhcJ Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS16000
Feature type CDS
Gene -
Product MetQ/NlpA family lipoprotein
Location 209874 - 210689 (strand: -1)
Length 816 (nucleotides) / 271 (amino acids)

Contig

Accession term accessions NZ_VXKB01000005 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 213534 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_5
Orthogroup size 22
N. genomes 7

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Genomic region

Domains

PF03180 NlpA lipoprotein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1464 Inorganic ion transport and metabolism (P) P ABC-type metal ion transport system, periplasmic component/surface antigen

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02073 D-methionine transport system substrate-binding protein ABC transporters -

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG045346 immunogenic lipoprotein A VF0513 Adherence

Protein Sequence

MAFKLKSVVIAGALLGSLVLAGCGQNEKDPKSIKVGVIVGAEQQVAEVAQKVAKDKYGLNVELVTFNDYVMPNEALSRGDIDLNAFQHKPYLDQQIKDRNYKLVPAGNTFVYPIAGYSKKIKSLDELQDGAQVALPNDPTNLGRSLLLLQQQGLITLKEGTGLLPTVLDVAENPKGLKLIELEAPQLPRSLDDNKIDLAIINTTYASQINLTPAKDGLFVEDKNSPYVNIIVSREDNKDSENVKQFVKAYQSDEVFQAADKVFNGGAVKGW

Flanking regions ( +/- flanking 50bp)

TTGCGCCGCACAAACTGCGGATGCACCTTAAACAGAACGAGGAAAAAATAATGGCTTTTAAATTAAAATCGGTTGTCATTGCAGGTGCTTTGCTGGGGTCATTGGTTCTGGCGGGCTGCGGACAAAATGAAAAAGACCCGAAGAGTATTAAAGTGGGCGTTATTGTCGGGGCTGAACAGCAAGTTGCTGAAGTCGCACAAAAAGTCGCAAAAGATAAGTATGGCCTGAATGTTGAGTTAGTCACATTCAATGATTACGTCATGCCGAATGAAGCGCTCAGCCGCGGGGATATTGACCTTAATGCTTTCCAGCATAAGCCGTATCTTGATCAGCAGATTAAAGATCGCAACTATAAATTAGTGCCGGCGGGCAACACGTTTGTTTATCCGATTGCCGGATATTCAAAAAAAATCAAATCACTGGATGAATTACAGGACGGCGCTCAGGTTGCTCTGCCAAATGATCCGACTAATTTAGGCCGCTCTCTGCTGCTGTTGCAGCAACAGGGATTAATCACACTGAAAGAAGGTACAGGTCTGCTGCCGACCGTGCTGGATGTGGCTGAAAACCCGAAAGGATTGAAACTGATTGAGCTGGAAGCCCCTCAGTTACCACGCTCTCTGGATGATAACAAAATCGACCTGGCCATCATCAACACGACCTACGCCAGCCAAATCAACTTAACACCGGCGAAAGACGGTCTGTTCGTTGAAGATAAAAATTCACCTTACGTAAACATTATTGTCTCACGCGAAGATAATAAAGACAGTGAGAATGTGAAGCAGTTTGTTAAGGCATATCAATCAGATGAAGTGTTTCAGGCTGCTGATAAAGTCTTTAACGGTGGTGCGGTAAAAGGCTGGTAATAAGAATAACCGGCAAGTTCTTCCATCTTGAATTGAAGAATATTACACTA