Homologs in group_2307

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17720 FBDBKF_17720 92.2 Morganella morganii S1 rpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 family
EHELCC_09745 EHELCC_09745 92.2 Morganella morganii S2 rpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 family
NLDBIP_10125 NLDBIP_10125 92.2 Morganella morganii S4 rpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 family
LHKJJB_07630 LHKJJB_07630 92.2 Morganella morganii S3 rpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 family
HKOGLL_07180 HKOGLL_07180 92.2 Morganella morganii S5 rpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 family
PMI_RS18450 PMI_RS18450 58.7 Proteus mirabilis HI4320 - RNA polymerase sigma factor

Distribution of the homologs in the orthogroup group_2307

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2307

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P23484 3.25e-14 70 28 3 164 1 fecI Ferric citrate uptake sigma factor FecI Escherichia coli (strain K12)
A0R2D4 3.99e-09 57 28 4 149 1 sigE ECF RNA polymerase sigma factor SigE Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
O07627 6.15e-09 55 26 5 173 2 ylaC RNA polymerase sigma factor YlaC Bacillus subtilis (strain 168)
P9WGG7 1.29e-08 56 28 3 144 1 sigE ECF RNA polymerase sigma factor SigE Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGG6 1.29e-08 56 28 3 144 3 sigE ECF RNA polymerase sigma factor SigE Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
H8F0N6 1.29e-08 56 28 3 144 1 sigE ECF RNA polymerase sigma factor SigE Mycobacterium tuberculosis (strain ATCC 35801 / TMC 107 / Erdman)
Q06198 1.18e-07 52 26 4 166 1 algU RNA polymerase sigma-H factor Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q44583 6.13e-06 47 30 2 130 3 nccH RNA polymerase sigma factor NccH Alcaligenes xylosoxydans xylosoxydans
A0A0H3CCX2 8.06e-06 47 32 5 142 2 sigF ECF RNA polymerase sigma factor SigF Caulobacter vibrioides (strain NA1000 / CB15N)
Q9WX11 4.81e-05 45 26 3 144 1 bldN ECF RNA polymerase sigma factor BldN Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
O07582 8.43e-05 44 25 2 164 1 sigM ECF RNA polymerase sigma factor SigM Bacillus subtilis (strain 168)
P17211 0.000456 43 28 4 112 3 whiG RNA polymerase sigma factor WhiG Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS15240
Feature type CDS
Gene -
Product RNA polymerase sigma factor
Location 33662 - 34201 (strand: -1)
Length 540 (nucleotides) / 179 (amino acids)

Contig

Accession term accessions NZ_VXKB01000005 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 213534 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2307
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04542 Sigma-70 region 2
PF08281 Sigma-70, region 4

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1595 Transcription (K) K DNA-directed RNA polymerase specialized sigma subunit, sigma24 family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03088 RNA polymerase sigma-70 factor, ECF subfamily - -

Protein Sequence

MTTEKSVSRLIAGAYHSTYHQLVRFFHKRLGNSQDARDLSQDVFARWLKGGGNTSVQETRAFLFKIANNVLVDHWRHSQRKGRDQVSEWDDSHTVDIAQDNADPQVQLEHQQRLTRLYQVLNELPPRQREAFVLYRFDGLSQSDIAEQMDISVSMVEKHIARALLQCKRAMNAGEQKDG

Flanking regions ( +/- flanking 50bp)

CGTGCGTAATGATCCCTTCATTTACAATGACGTTGATATACACCAGAGAAATGACAACTGAAAAATCGGTAAGCAGGCTGATCGCCGGCGCCTATCACTCAACCTACCATCAGCTTGTCCGCTTCTTCCACAAGCGGCTGGGCAATAGTCAGGATGCACGGGATCTGTCGCAGGATGTATTCGCCCGCTGGCTTAAAGGCGGCGGAAACACCTCTGTGCAGGAAACCCGGGCATTCTTGTTTAAAATCGCCAACAATGTACTGGTCGATCACTGGCGTCACAGCCAGCGCAAAGGCCGCGATCAGGTCAGTGAATGGGATGATTCACATACGGTTGATATTGCACAGGATAATGCAGATCCGCAGGTACAGCTCGAACATCAGCAGCGCCTGACGCGGCTATATCAGGTGTTAAACGAATTACCGCCCCGCCAGCGTGAAGCGTTTGTGCTTTACCGCTTTGACGGACTTTCACAAAGTGATATTGCGGAACAAATGGATATCTCAGTCAGTATGGTGGAAAAACATATCGCCCGCGCCCTGCTGCAATGCAAGCGTGCCATGAACGCCGGAGAACAGAAGGACGGATAATGGCAGATACCGCGCAGGAGCAGGACGAACGGGATGATGCCGCCGCGCTG