Orthogroup:group_2307


Homologs in group_2307

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_17720 FBDBKF_17720 Morganella morganii S1 rpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 family
EHELCC_09745 EHELCC_09745 Morganella morganii S2 rpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 family
NLDBIP_10125 NLDBIP_10125 Morganella morganii S4 rpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 family
LHKJJB_07630 LHKJJB_07630 Morganella morganii S3 rpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 family
HKOGLL_07180 HKOGLL_07180 Morganella morganii S5 rpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 family
F4V73_RS15240 F4V73_RS15240 Morganella psychrotolerans - RNA polymerase sigma factor
PMI_RS18450 PMI_RS18450 Proteus mirabilis HI4320 - RNA polymerase sigma factor

Distribution of group_2307 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2307 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2307

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2307.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rpoE 5
2 - 2

Product

# Product Occurence
1 DNA-directed RNA polymerase specialized sigma subunit, sigma24 family 5
2 RNA polymerase sigma factor 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1595 7 K Transcription (K) DNA-directed RNA polymerase specialized sigma subunit, sigma24 family

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03088 7 RNA polymerase sigma-70 factor, ECF subfamily - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF04542 7 Sigma-70 region 2
PF08281 7 Sigma-70, region 4

Annotations of the 17 SwissProt hits

Annotation Number of occurrences
ECF RNA polymerase sigma factor BldN 1
ECF RNA polymerase sigma factor EcfG 1
ECF RNA polymerase sigma factor SigE 4
ECF RNA polymerase sigma factor SigF 1
ECF RNA polymerase sigma factor SigH 1
ECF RNA polymerase sigma factor SigM 1
Ferric citrate uptake sigma factor FecI 1
RNA polymerase sigma factor CnrH 1
RNA polymerase sigma factor HrpL 1
RNA polymerase sigma factor NccH 1
RNA polymerase sigma factor WhiG 1
RNA polymerase sigma factor YlaC 1
RNA polymerase sigma-E factor 1
RNA polymerase sigma-H factor 1

Protein length

Min length 179
Max length 182
Mean length (sd) 180.1 (0.9)
Median length 180.0

Protein length distribution