K03088


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Kegg Orthologs K03088, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Kegg Orthologs within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Kegg Ortholog(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Kegg Orthologs has been clustered.
In red the Kegg Orthologs with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Kegg Orthologs prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Kegg Orthologs.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Kegg Orthologs prediction.

Description

External link K03088
KO K03088
Description RNA polymerase sigma-70 factor, ECF subfamily

KO part of 0 pathways

KO part of 0 modules

Occurence in the database

K03088 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_565 PMI_RS09350 2040616 2041194 -1 rpoE RNA polymerase sigma factor RpoE Proteus mirabilis HI4320
1 group_2307 PMI_RS18450 4051575 4052123 -1 RNA polymerase sigma factor Proteus mirabilis HI4320
2 group_2307 FBDBKF_17720 1188 1730 1 rpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 family Morganella morganii S1
3 group_2307 EHELCC_09745 180620 181162 1 rpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 family Morganella morganii S2
4 group_2307 NLDBIP_10125 180620 181162 1 rpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 family Morganella morganii S4
5 group_2307 LHKJJB_07630 36076 36618 -1 rpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 family Morganella morganii S3
6 group_2307 HKOGLL_07180 36076 36618 -1 rpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 family Morganella morganii S5
7 group_565 FBDBKF_01460 290673 291251 -1 rpoE RNA polymerase sigma factor RpoE Morganella morganii S1
8 group_565 EHELCC_00085 17617 18195 1 rpoE RNA polymerase sigma factor RpoE Morganella morganii S2
9 group_565 NLDBIP_03375 661941 662519 -1 rpoE RNA polymerase sigma factor RpoE Morganella morganii S4
10 group_565 LHKJJB_04890 269182 269760 -1 rpoE RNA polymerase sigma factor RpoE Morganella morganii S3
11 group_565 HKOGLL_02155 17822 18400 1 rpoE RNA polymerase sigma factor RpoE Morganella morganii S5
12 group_565 F4V73_RS01945 425400 425975 1 rpoE RNA polymerase sigma factor RpoE Morganella psychrotolerans
13 group_2307 F4V73_RS15240 33662 34201 -1 RNA polymerase sigma factor Morganella psychrotolerans