Homologs in group_1736

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_12115 FBDBKF_12115 92.1 Morganella morganii S1 hemN oxygen-independent coproporphyrinogen III oxidase
EHELCC_14190 EHELCC_14190 92.1 Morganella morganii S2 hemN oxygen-independent coproporphyrinogen III oxidase
NLDBIP_15285 NLDBIP_15285 92.1 Morganella morganii S4 hemN oxygen-independent coproporphyrinogen III oxidase
LHKJJB_15325 LHKJJB_15325 92.1 Morganella morganii S3 hemN oxygen-independent coproporphyrinogen III oxidase
HKOGLL_14445 HKOGLL_14445 92.1 Morganella morganii S5 hemN oxygen-independent coproporphyrinogen III oxidase
PMI_RS14260 PMI_RS14260 78.9 Proteus mirabilis HI4320 hemN oxygen-independent coproporphyrinogen III oxidase

Distribution of the homologs in the orthogroup group_1736

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1736

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A1E1 0.0 717 74 0 452 3 hemN Oxygen-independent coproporphyrinogen III oxidase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1E2 0.0 717 74 0 452 3 None Oxygen-independent coproporphyrinogen III oxidase Salmonella typhi
P32131 0.0 715 74 0 452 1 hemN Oxygen-independent coproporphyrinogen III oxidase Escherichia coli (strain K12)
P74132 1.95e-159 462 51 3 453 1 hemN Oxygen-independent coproporphyrinogen III oxidase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P77915 3.82e-154 448 49 4 461 2 hemN Oxygen-independent coproporphyrinogen III oxidase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
O67886 6.02e-140 412 45 3 453 3 hemN Oxygen-independent coproporphyrinogen III oxidase Aquifex aeolicus (strain VF5)
O34162 2.37e-135 401 46 2 438 2 hemN Oxygen-independent coproporphyrinogen III oxidase Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
O25376 1.34e-126 378 43 4 455 3 hemN Oxygen-independent coproporphyrinogen III oxidase Helicobacter pylori (strain ATCC 700392 / 26695)
Q9ZLH0 8.19e-125 373 42 4 455 3 hemN Oxygen-independent coproporphyrinogen III oxidase Helicobacter pylori (strain J99 / ATCC 700824)
O31067 3.93e-104 315 51 2 325 3 hemN Oxygen-independent coproporphyrinogen III oxidase (Fragment) Thermostichus vulcanus
O31381 1.88e-94 295 37 3 426 3 hemN Oxygen-independent coproporphyrinogen III oxidase Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
Q51676 1.15e-90 285 37 5 428 3 hemN Oxygen-independent coproporphyrinogen III oxidase Paracoccus denitrificans (strain Pd 1222)
P95651 5.64e-90 283 36 5 444 3 hemN Oxygen-independent coproporphyrinogen III oxidase Cereibacter sphaeroides (strain ATCC 17025 / ATH 2.4.3)
P33770 1.22e-85 272 35 5 444 3 hemN Coproporphyrinogen III oxidase, anaerobic 1 Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.)
P51008 1.88e-81 261 36 4 427 3 hemZ Oxygen-independent coproporphyrinogen III oxidase Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.)
P95506 4.41e-69 219 68 0 143 3 hemN Oxygen-independent coproporphyrinogen III oxidase (Fragment) Mannheimia haemolytica
P54304 9.49e-38 144 26 6 389 2 hemW Heme chaperone HemW Bacillus subtilis (strain 168)
P43899 2.99e-30 124 31 2 245 3 hemW Heme chaperone HemW Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P52062 1.19e-29 122 31 4 244 1 hemW Heme chaperone HemW Escherichia coli (strain K12)
P55477 2e-29 119 34 1 197 4 NGR_a03400 Uncharacterized protein y4hJ Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q8K928 2.01e-28 119 26 2 241 3 hemW Heme chaperone HemW Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q9CGF7 1.06e-27 117 29 4 246 1 hemW Heme chaperone HemW Lactococcus lactis subsp. lactis (strain IL1403)
P57615 3.19e-27 115 26 3 242 3 hemW Heme chaperone HemW Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
A0A384LP51 3.21e-26 113 23 5 386 1 chuW Anaerobilin synthase Escherichia coli O157:H7
P9WP73 4.96e-22 100 24 8 394 1 hemW Heme chaperone HemW Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WP72 4.96e-22 100 24 8 394 3 hemW Heme chaperone HemW Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P73245 1.22e-21 100 25 6 306 1 hemW Heme chaperone HemW Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
A4IGH2 2.51e-19 93 25 3 241 2 rsad1 Radical S-adenosyl methionine domain-containing protein 1, mitochondrial Danio rerio
Q9HA92 3.31e-16 84 25 5 247 1 RSAD1 Radical S-adenosyl methionine domain-containing protein 1, mitochondrial Homo sapiens
Q5SUV1 2.16e-15 81 25 4 243 2 Rsad1 Radical S-adenosyl methionine domain-containing protein 1, mitochondrial Mus musculus
A5D7B1 4.38e-15 80 24 6 255 2 RSAD1 Radical S-adenosyl methionine domain-containing protein 1, mitochondrial Bos taurus
Q89A47 2.63e-12 71 22 0 188 3 hemW Putative heme chaperone HemW-like protein Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q796V8 5.4e-11 68 25 4 192 2 hemZ Oxygen-independent coproporphyrinogen-III oxidase-like protein HemZ Bacillus subtilis (strain 168)
Q54VE8 1.64e-10 66 26 7 187 3 rsad1 Radical S-adenosyl methionine domain-containing protein 1, mitochondrial Dictyostelium discoideum
B4S8Z6 1.68e-06 53 26 8 230 3 rimO Ribosomal protein uS12 methylthiotransferase RimO Prosthecochloris aestuarii (strain DSM 271 / SK 413)
A0M7D3 7.07e-06 52 24 11 251 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Christiangramia forsetii (strain DSM 17595 / CGMCC 1.15422 / KT0803)
B3EDL2 7.63e-06 51 25 8 227 3 rimO Ribosomal protein uS12 methylthiotransferase RimO Chlorobium limicola (strain DSM 245 / NBRC 103803 / 6330)
Q2RZF8 1.97e-05 50 26 11 243 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Salinibacter ruber (strain DSM 13855 / M31)
Q92SI7 2.62e-05 50 28 9 221 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Rhizobium meliloti (strain 1021)
B3EPX5 3.41e-05 49 24 8 253 3 rimO Ribosomal protein uS12 methylthiotransferase RimO Chlorobium phaeobacteroides (strain BS1)
B5ENG4 3.48e-05 49 26 13 254 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Acidithiobacillus ferrooxidans (strain ATCC 53993 / BNL-5-31)
B7J5B2 3.48e-05 49 26 13 254 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP 104768 / NCIMB 8455)
B1L8F3 4.97e-05 49 27 9 202 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Thermotoga sp. (strain RQ2)
A5IJD4 4.97e-05 49 27 9 202 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Thermotoga petrophila (strain ATCC BAA-488 / DSM 13995 / JCM 10881 / RKU-1)
A4XL48 0.000146 47 24 9 235 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331)
Q72DE5 0.000175 47 24 12 295 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)
A1VF04 0.000183 47 24 12 295 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Nitratidesulfovibrio vulgaris (strain DP4)
B0UNY0 0.000193 47 24 10 281 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Methylobacterium sp. (strain 4-46)
Q1MMB6 0.000219 47 24 7 223 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Rhizobium johnstonii (strain DSM 114642 / LMG 32736 / 3841)
A8GQ03 0.000239 47 24 8 270 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Rickettsia akari (strain Hartford)
A0Q0P6 0.000305 46 23 12 278 3 rimO Ribosomal protein uS12 methylthiotransferase RimO Clostridium novyi (strain NT)
Q3SMT7 0.000368 46 24 12 270 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Nitrobacter winogradskyi (strain ATCC 25391 / DSM 10237 / CIP 104748 / NCIMB 11846 / Nb-255)
A8F011 0.000404 46 23 6 235 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Rickettsia canadensis (strain McKiel)
A4SFH7 0.00045 46 28 3 132 3 rimO Ribosomal protein uS12 methylthiotransferase RimO Chlorobium phaeovibrioides (strain DSM 265 / 1930)
A8MLX7 0.000464 46 27 3 150 3 rimO Ribosomal protein uS12 methylthiotransferase RimO Alkaliphilus oremlandii (strain OhILAs)
A6U5H0 0.000524 46 27 9 225 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Sinorhizobium medicae (strain WSM419)
A7MQS5 0.000588 45 24 9 235 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Cronobacter sakazakii (strain ATCC BAA-894)
Q1GK98 0.000605 45 26 9 210 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Ruegeria sp. (strain TM1040)
Q47RR8 0.000766 45 24 16 317 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Thermobifida fusca (strain YX)
B7MPH7 0.000805 45 24 9 235 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Escherichia coli O81 (strain ED1a)
Q9KAB7 0.000862 45 25 11 239 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
A7IGB2 0.001 45 25 9 227 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS14525
Feature type CDS
Gene hemN
Product oxygen-independent coproporphyrinogen III oxidase
Location 134270 - 135640 (strand: 1)
Length 1371 (nucleotides) / 456 (amino acids)

Contig

Accession term accessions NZ_VXKB01000004 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 258164 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1736
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04055 Radical SAM superfamily
PF06969 HemN C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0635 Coenzyme transport and metabolism (H) H Coproporphyrinogen-III oxidase HemN (oxygen-independent) or related Fe-S oxidoreductase

Kegg Ortholog Annotation(s)

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG013205 oxygen-independent coproporphyrinogen III oxidase VF0758 Nutritional/Metabolic factor

Protein Sequence

MSDAIIWDLPLIQKYNYSGPRYTSYPTALEFNQQYSDGDFLASANRYPQRPLSLYVHIPFCHKLCYFCGCNKLVTRQKHKADEYLTILEKEIAARAALFAGRDVHQMHWGGGTPTYLDKAQISRLTGMLRRYFHFTDNAELSIEIDPREIELDVIDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEATIFALVERARATGFDSVSIDLIYGLPKQTPESFAFTLQRVAELSPDRLSVFNYAHLPNLFAAQRKIKDEDLPSAEQKLIILQQTIESLTGSGYQFIGMDHFAKPEDELAIAQNKGILHRNFQGYTTHEECDLLGFGVSAISMLGDHYAQNQKDLKTYYAQVEEGGNALWRGLVLTDEDCLRRDVIKALICNFRLDYSEIESLYNLDFKVHFAEDLQLLKPMADDGMVEIRDNALVVTPRGRLLIRNICMCFDTYLRNQMRQRQFSRVI

Flanking regions ( +/- flanking 50bp)

AGCGGAAAACACATTGATGTGATTTTTTAAGGCGAAGCAAAGGGGAGAGCATGTCCGACGCGATCATCTGGGATCTGCCATTGATCCAGAAATATAACTATTCCGGCCCGCGATACACGTCGTATCCCACTGCGCTGGAGTTTAACCAGCAATACAGTGACGGTGATTTTCTCGCCTCGGCAAACCGCTACCCTCAGCGCCCGCTGTCGTTATATGTGCATATTCCGTTCTGCCATAAGCTCTGTTATTTCTGCGGTTGTAATAAATTAGTCACTCGGCAGAAACATAAAGCGGATGAATACCTGACAATACTGGAAAAAGAGATAGCGGCCCGCGCAGCACTGTTTGCCGGACGTGACGTGCATCAGATGCACTGGGGCGGCGGTACGCCAACCTATCTTGATAAAGCACAGATAAGCCGCCTGACCGGTATGCTGCGCCGGTATTTTCATTTTACGGATAATGCCGAACTCTCGATTGAAATCGATCCGCGTGAAATTGAATTGGATGTTATCGACCATCTGCGTGCAGAAGGCTTTAATCGTCTGAGCATGGGCGTGCAGGATTTTAATAAAGAGGTTCAGCGCCTGGTCAACCGCGAGCAGGACGAAGCCACTATTTTCGCTCTGGTAGAGCGCGCCCGCGCGACCGGGTTTGACTCCGTCAGTATTGACCTGATTTATGGTTTACCTAAACAGACCCCGGAAAGTTTTGCATTCACTCTGCAACGGGTGGCAGAACTGTCCCCGGATCGCCTGAGTGTCTTTAACTATGCACACCTGCCGAATCTGTTTGCTGCCCAGCGGAAAATTAAAGATGAAGATTTACCGTCTGCGGAGCAGAAACTGATTATTTTGCAACAGACCATTGAAAGCCTGACCGGCAGCGGTTATCAGTTTATCGGAATGGATCATTTTGCCAAACCGGAAGATGAGCTGGCGATTGCGCAGAATAAAGGAATTTTGCACCGCAACTTCCAGGGCTATACCACGCATGAAGAGTGTGATTTGCTCGGCTTTGGCGTGTCGGCAATCAGTATGCTGGGTGACCATTACGCGCAAAACCAGAAAGACCTGAAAACGTATTATGCACAGGTGGAAGAGGGCGGAAACGCGCTGTGGCGCGGTTTAGTGCTGACAGACGAAGATTGCCTGCGCCGTGATGTGATCAAGGCGCTGATTTGTAATTTCCGCCTGGACTATTCAGAGATTGAATCTCTGTATAATCTCGATTTTAAAGTCCATTTCGCCGAAGATTTACAATTATTAAAGCCGATGGCGGATGACGGTATGGTGGAAATCCGGGATAACGCCCTGGTAGTCACACCGCGCGGGCGTTTGCTTATCCGCAATATCTGTATGTGTTTTGATACTTATCTGCGTAATCAGATGCGCCAGCGTCAATTCTCCCGCGTTATCTGAGACGCGTCCGGGGTTGATGTGATGTCATCAATCCCGGCCTCTTTCAGTTT