Homologs in group_421

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_18970 FBDBKF_18970 88.6 Morganella morganii S1 nlpD murein hydrolase activator NlpD
EHELCC_18715 EHELCC_18715 88.6 Morganella morganii S2 nlpD murein hydrolase activator NlpD
NLDBIP_18590 NLDBIP_18590 88.6 Morganella morganii S4 nlpD murein hydrolase activator NlpD
LHKJJB_18585 LHKJJB_18585 88.6 Morganella morganii S3 nlpD murein hydrolase activator NlpD
HKOGLL_18320 HKOGLL_18320 88.6 Morganella morganii S5 nlpD murein hydrolase activator NlpD
F4V73_RS05050 F4V73_RS05050 42.7 Morganella psychrotolerans - peptidoglycan DD-metalloendopeptidase family protein
PMI_RS11020 PMI_RS11020 56.1 Proteus mirabilis HI4320 nlpD murein hydrolase activator NlpD

Distribution of the homologs in the orthogroup group_421

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_421

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q56131 1.63e-103 312 47 11 391 3 nlpD Murein hydrolase activator NlpD Salmonella typhi
P40827 2.06e-102 310 46 10 397 3 nlpD Murein hydrolase activator NlpD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P39700 3.08e-102 309 46 10 397 2 nlpD Murein hydrolase activator NlpD Salmonella dublin
P0ADA4 5.14e-99 301 45 10 400 3 nlpD Murein hydrolase activator NlpD Shigella flexneri
P0ADA3 5.14e-99 301 45 10 400 1 nlpD Murein hydrolase activator NlpD Escherichia coli (strain K12)
P44833 1.95e-80 254 49 7 283 3 lppB Outer membrane antigenic lipoprotein B Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P36685 6.72e-70 225 38 10 364 3 lppB Outer membrane antigenic lipoprotein B (Fragment) Histophilus somni
Q46798 1.32e-58 193 40 3 262 3 ygeR Uncharacterized lipoprotein YgeR Escherichia coli (strain K12)
P45682 1.25e-53 182 41 5 254 3 PA3623 Lipoprotein NlpD/LppB homolog Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P47764 3.13e-52 171 77 0 97 3 nlpD Lipoprotein NlpD (Fragment) Yersinia enterocolitica
P57493 2.09e-36 137 31 4 254 3 BU418 Protein NlpD/LppB homolog Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
A0A0H3C9Q9 4.23e-26 113 31 8 271 3 dipM Cell division protein DipM Caulobacter vibrioides (strain NA1000 / CB15N)
P37690 3.36e-12 70 36 3 119 1 envC Murein hydrolase activator EnvC Escherichia coli (strain K12)
P44864 8.55e-12 69 31 4 157 4 HI_0756 Uncharacterized protein HI_0756 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P44693 8.53e-10 63 35 1 102 3 HI_0409 Uncharacterized metalloprotease HI_0409 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0AFT1 8.06e-08 57 35 2 102 3 mepM Murein DD-endopeptidase MepM Shigella flexneri
P0AFS9 8.06e-08 57 35 2 102 1 mepM Murein DD-endopeptidase MepM Escherichia coli (strain K12)
P0AFT0 8.06e-08 57 35 2 102 3 mepM Murein DD-endopeptidase MepM Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8K9M4 1.82e-07 56 33 3 104 3 BUsg_310 Uncharacterized metalloprotease BUsg_310 Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q9JZ20 9.98e-06 51 38 1 81 1 NMB1333 Uncharacterized protein NMB1333 Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
O64046 1.08e-05 51 35 3 100 3 yomI Probable tape measure protein Bacillus phage SPbeta
Q89AI9 1.08e-05 50 31 2 101 3 bbp_296 Uncharacterized metalloprotease bbp_296 Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
O31976 1.09e-05 51 35 3 100 3 yomI SPbeta prophage-derived uncharacterized transglycosylase YomI Bacillus subtilis (strain 168)
A0A0H3K6J4 0.000623 45 33 3 105 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain Newman)
Q5HJ99 0.000623 45 33 3 105 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain COL)
O33599 0.000623 45 33 3 105 1 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q7A7T0 0.000634 45 33 3 105 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain N315)
Q99WV0 0.000634 45 33 3 105 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q6GK35 0.000681 44 33 3 105 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain MRSA252)
Q8NYG1 0.000687 44 33 3 105 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain MW2)
Q6GCJ6 0.000687 44 33 3 105 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain MSSA476)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS13880
Feature type CDS
Gene nlpD
Product murein hydrolase activator NlpD
Location 413571 - 414680 (strand: -1)
Length 1110 (nucleotides) / 369 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_421
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF01476 LysM domain
PF01551 Peptidase family M23

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4942 Cell cycle control, cell division, chromosome partitioning (D) D Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06194 lipoprotein NlpD - -

Protein Sequence

MNSGNPMKAIRWIAFGSLVSTVLAGCSTPYHAAPISSVEESSSAPVMTAGNDNSNSSVSTPMPGRPQLSSENSQPVSRTAVQQQPRAANIQTSNDGRIRYNRDYESIPKGSYSGNTYTVQRGDTLFYIAYISGSDFRELASQNNIPEPYGLNEGQVIRLSNGGGNNIAPVSGGTQVATNKNTPQNRVVDSQPTNAYSESAGATSTGGKMLSPQVTAQAKGNSGAVTPAVVKSPSVTTSAPVAVNSGSFKWGWPAEGNVISNYTGPTSGNRGIDIGGTRGQPVFASAPGKVVYTGNALRGYGNLVIIKHNDDFLTAYAHNDTILVKDQQDVAAGQKISTMGSSGTTSVRLHFEIRYKGKSVNPLQYLPQR

Flanking regions ( +/- flanking 50bp)

ATTTTATGATTGTCAGTTTTCGCAACGTTTCCGGTTTTGGGAGAAGAAATATGAACTCAGGAAACCCTATGAAAGCAATACGATGGATTGCTTTCGGGTCGCTGGTGAGCACGGTTTTGGCCGGTTGCTCAACGCCGTATCATGCCGCACCAATCAGCAGTGTGGAAGAGAGCAGCAGCGCGCCTGTGATGACAGCCGGCAATGACAACAGTAATTCTTCGGTTTCCACACCGATGCCGGGACGTCCGCAACTCAGCTCAGAAAATTCACAGCCTGTGAGCCGGACAGCGGTACAGCAACAACCGCGTGCTGCAAATATTCAGACCAGTAATGATGGACGTATCCGCTATAACCGTGATTATGAATCCATTCCGAAAGGCAGTTACAGCGGAAATACGTATACCGTTCAGCGCGGCGACACCTTATTTTATATCGCTTATATTTCCGGATCTGACTTCCGCGAACTGGCATCACAGAACAATATTCCCGAGCCTTACGGCCTGAACGAAGGGCAGGTGATACGATTAAGCAATGGCGGCGGTAATAACATTGCACCGGTCAGCGGCGGCACTCAGGTAGCAACAAATAAGAATACTCCGCAAAACAGGGTGGTTGATTCTCAACCAACTAATGCGTATTCTGAATCAGCAGGCGCAACATCAACCGGCGGTAAGATGCTGTCACCACAGGTCACCGCACAAGCGAAGGGTAACTCAGGCGCAGTCACACCAGCCGTCGTTAAGTCACCTTCAGTCACAACCAGCGCGCCTGTTGCCGTAAATAGTGGTTCCTTTAAATGGGGCTGGCCAGCGGAAGGCAATGTCATTTCCAACTACACAGGACCTACCAGCGGTAACCGGGGTATTGATATCGGTGGTACACGTGGACAGCCTGTTTTTGCTTCAGCGCCGGGTAAGGTGGTTTATACCGGCAATGCGTTACGCGGTTACGGCAATCTGGTCATCATCAAACATAATGATGATTTCCTGACGGCATACGCACATAACGACACCATTTTGGTTAAAGATCAGCAGGATGTTGCTGCCGGTCAGAAAATCTCCACAATGGGCAGCAGCGGAACCACATCAGTCAGATTACATTTTGAAATTCGTTACAAGGGAAAATCAGTCAACCCGTTGCAGTATTTACCGCAGCGATAAACGGCAGAACAGCTTGTTCTGCCTGAATTATCTAGGGTAGGAGCAAGCTG