Homologs in group_421

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_18970 FBDBKF_18970 43.9 Morganella morganii S1 nlpD murein hydrolase activator NlpD
EHELCC_18715 EHELCC_18715 43.9 Morganella morganii S2 nlpD murein hydrolase activator NlpD
NLDBIP_18590 NLDBIP_18590 43.9 Morganella morganii S4 nlpD murein hydrolase activator NlpD
LHKJJB_18585 LHKJJB_18585 43.9 Morganella morganii S3 nlpD murein hydrolase activator NlpD
HKOGLL_18320 HKOGLL_18320 43.9 Morganella morganii S5 nlpD murein hydrolase activator NlpD
F4V73_RS13880 F4V73_RS13880 42.7 Morganella psychrotolerans nlpD murein hydrolase activator NlpD
PMI_RS11020 PMI_RS11020 42.4 Proteus mirabilis HI4320 nlpD murein hydrolase activator NlpD

Distribution of the homologs in the orthogroup group_421

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_421

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P45682 2.53e-36 129 45 1 133 3 PA3623 Lipoprotein NlpD/LppB homolog Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q56131 9.1e-36 130 41 1 148 3 nlpD Murein hydrolase activator NlpD Salmonella typhi
P39700 9.87e-36 130 41 1 148 2 nlpD Murein hydrolase activator NlpD Salmonella dublin
P40827 1.04e-35 130 41 1 148 3 nlpD Murein hydrolase activator NlpD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0ADA4 7.96e-34 125 47 1 119 3 nlpD Murein hydrolase activator NlpD Shigella flexneri
P0ADA3 7.96e-34 125 47 1 119 1 nlpD Murein hydrolase activator NlpD Escherichia coli (strain K12)
Q46798 2.15e-33 121 47 1 117 3 ygeR Uncharacterized lipoprotein YgeR Escherichia coli (strain K12)
P44833 2e-32 122 44 3 145 3 lppB Outer membrane antigenic lipoprotein B Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P47764 2.49e-30 108 52 0 95 3 nlpD Lipoprotein NlpD (Fragment) Yersinia enterocolitica
P36685 9.46e-27 105 48 1 110 3 lppB Outer membrane antigenic lipoprotein B (Fragment) Histophilus somni
A0A0H3C9Q9 3.66e-23 97 34 5 169 3 dipM Cell division protein DipM Caulobacter vibrioides (strain NA1000 / CB15N)
P57493 2.9e-21 90 37 3 144 3 BU418 Protein NlpD/LppB homolog Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P37690 5.63e-16 77 31 4 145 1 envC Murein hydrolase activator EnvC Escherichia coli (strain K12)
P44693 4.71e-14 71 40 1 94 3 HI_0409 Uncharacterized metalloprotease HI_0409 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0AFT1 8.44e-13 68 39 3 108 3 mepM Murein DD-endopeptidase MepM Shigella flexneri
P0AFS9 8.44e-13 68 39 3 108 1 mepM Murein DD-endopeptidase MepM Escherichia coli (strain K12)
P0AFT0 8.44e-13 68 39 3 108 3 mepM Murein DD-endopeptidase MepM Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P44864 8.79e-13 68 33 4 140 4 HI_0756 Uncharacterized protein HI_0756 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q89AI9 2.12e-09 58 38 2 94 3 bbp_296 Uncharacterized metalloprotease bbp_296 Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
A0A0H3K6J4 3.43e-09 57 37 4 103 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain Newman)
Q5HJ99 3.43e-09 57 37 4 103 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain COL)
O33599 3.43e-09 57 37 4 103 1 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q7A7T0 3.49e-09 57 37 4 103 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain N315)
Q99WV0 3.49e-09 57 37 4 103 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q6GK35 3.56e-09 57 37 4 103 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain MRSA252)
Q8NYG1 3.96e-09 57 37 4 103 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain MW2)
Q6GCJ6 3.96e-09 57 37 4 103 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain MSSA476)
Q8K9M4 1.05e-08 56 35 3 94 3 BUsg_310 Uncharacterized metalloprotease BUsg_310 Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
O05156 5.58e-08 54 39 3 94 1 None Glycyl-glycine endopeptidase ALE-1 Staphylococcus capitis
P10548 5.28e-07 51 39 3 94 3 lss Lysostaphin Staphylococcus staphylolyticus
P10547 5.79e-07 51 39 3 94 1 lss Lysostaphin Staphylococcus simulans
O31976 0.00014 44 32 3 99 3 yomI SPbeta prophage-derived uncharacterized transglycosylase YomI Bacillus subtilis (strain 168)
O64046 0.00014 44 32 3 99 3 yomI Probable tape measure protein Bacillus phage SPbeta
Q9JZ20 0.000458 42 29 1 85 1 NMB1333 Uncharacterized protein NMB1333 Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS05050
Feature type CDS
Gene -
Product peptidoglycan DD-metalloendopeptidase family protein
Location 1075935 - 1076411 (strand: 1)
Length 477 (nucleotides) / 158 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_421
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF01551 Peptidase family M23

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4942 Cell cycle control, cell division, chromosome partitioning (D) D Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06194 lipoprotein NlpD - -

Protein Sequence

MKKLTAAVLFAPVFVLLSACTTPVEKNTLTGCDAATAAKTTGQFQWPLKGNIVDNFTSLKAITIAVEKGKPVLSAADGDVVYVGNALKGYGNLIIISHDEVYRTAYGHNDKILVKEGDKVKTGQQIATVGDTDAKQPLLHFEVRKNGNAVDPCLYLAK

Flanking regions ( +/- flanking 50bp)

CAAACGATTATTATTCAGAAGAAGAGTCATTCATATTTAAGGAATAATCAGTGAAAAAATTAACAGCGGCTGTCTTATTCGCGCCGGTATTTGTTCTGCTGTCAGCCTGTACAACCCCCGTTGAAAAAAACACGCTTACAGGATGTGATGCCGCAACTGCCGCAAAAACAACCGGACAGTTTCAGTGGCCGCTGAAAGGCAATATTGTTGATAACTTTACCAGCCTCAAAGCAATCACTATTGCGGTTGAAAAAGGCAAACCTGTCCTTTCCGCTGCAGATGGTGATGTGGTGTATGTCGGCAATGCCCTGAAAGGCTACGGTAACCTGATTATCATCAGTCATGATGAGGTTTACCGCACAGCCTACGGACATAACGATAAAATATTGGTAAAAGAAGGCGATAAAGTCAAAACAGGTCAGCAAATAGCCACCGTCGGAGACACTGATGCCAAACAGCCACTGCTGCACTTTGAAGTCAGAAAAAACGGTAATGCCGTAGATCCGTGCCTGTATCTGGCGAAATAATCATTCTGTTGTTTGCATAAACCTCCTTATCTGAAGGAGGTTTTTGACTA