Homologs in group_6

Help

21 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_20025 FBDBKF_20025 34.0 Morganella morganii S1 - fimbrial biogenesis usher protein
FBDBKF_20055 FBDBKF_20055 33.6 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
EHELCC_03475 EHELCC_03475 33.6 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
EHELCC_03505 EHELCC_03505 34.0 Morganella morganii S2 - fimbrial biogenesis usher protein
NLDBIP_03475 NLDBIP_03475 33.6 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
NLDBIP_03505 NLDBIP_03505 34.0 Morganella morganii S4 - fimbrial biogenesis usher protein
LHKJJB_09305 LHKJJB_09305 33.6 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
LHKJJB_09335 LHKJJB_09335 34.0 Morganella morganii S3 - fimbrial biogenesis usher protein
HKOGLL_09640 HKOGLL_09640 34.0 Morganella morganii S5 - fimbrial biogenesis usher protein
HKOGLL_09670 HKOGLL_09670 33.6 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
F4V73_RS00860 F4V73_RS00860 25.3 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS01045 F4V73_RS01045 37.0 Morganella psychrotolerans - fimbrial biogenesis usher protein
F4V73_RS01675 F4V73_RS01675 33.1 Morganella psychrotolerans fimD outer membrane usher protein FimD
F4V73_RS01860 F4V73_RS01860 30.7 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS06000 F4V73_RS06000 19.1 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS07390 F4V73_RS07390 28.3 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS08460 F4V73_RS08460 42.4 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS09375 F4V73_RS09375 27.6 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10255 F4V73_RS10255 42.4 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10900 F4V73_RS10900 36.9 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS12580 F4V73_RS12580 25.1 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein

Distribution of the homologs in the orthogroup group_6

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_6

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P46009 1.14e-158 488 35 22 877 3 focD Outer membrane usher protein FocD Escherichia coli
P30130 3.51e-158 487 34 20 882 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P75857 1.89e-147 459 34 21 844 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
Q8XDD1 2.11e-146 456 34 22 844 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P42915 4.92e-146 454 36 17 801 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P43662 7.55e-146 454 34 21 827 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P37924 8.13e-146 454 34 20 857 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P77468 1.92e-137 432 32 21 854 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P26949 2.57e-117 379 31 23 845 1 caf1A F1 capsule-anchoring protein Yersinia pestis
P53517 2.66e-114 371 30 26 852 3 afaC Outer membrane usher protein AfaC Escherichia coli
P46000 6.67e-113 367 31 20 840 3 fasD Outer membrane usher protein FasD Escherichia coli
P33408 3.34e-103 342 29 21 802 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
Q56983 8.01e-100 332 29 21 853 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 8.01e-100 332 29 21 853 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P76655 3.58e-97 325 31 25 800 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P46005 1.17e-96 324 29 25 853 3 aggC Outer membrane usher protein AggC Escherichia coli
P33129 4.24e-95 320 31 30 871 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P33388 2.72e-94 317 31 29 835 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
Q8X5K8 1.21e-91 300 35 14 507 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P33397 2.32e-91 310 28 25 874 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45998 6.69e-89 303 27 25 874 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45997 1.63e-88 302 28 25 874 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P75750 6.97e-79 275 28 24 796 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P53514 4.29e-74 262 27 26 839 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P33341 1.23e-73 261 27 25 824 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P33410 6.07e-72 257 27 30 862 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P15484 1.07e-69 251 29 16 704 3 None Outer membrane usher protein CS3-2 Escherichia coli
P21647 2.39e-69 249 27 22 773 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P77196 1.67e-68 247 27 30 841 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P07110 1.98e-66 241 30 18 693 1 papC Outer membrane usher protein PapC Escherichia coli
P53512 1.04e-63 233 28 22 789 3 cssD Outer membrane usher protein CssD Escherichia coli
P53513 2.28e-62 228 28 25 816 3 cssD Outer membrane usher protein CssD Escherichia coli
P37868 6.51e-60 221 26 28 834 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q7DBJ9 2.15e-50 185 34 9 349 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P76137 3.61e-49 181 34 9 349 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)
Q8X5K7 5.79e-49 181 34 13 367 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
P12050 6.38e-47 183 26 30 751 3 fanD Outer membrane usher protein FanD Escherichia coli
P06970 5.42e-34 144 23 27 842 3 faeD Outer membrane usher protein FaeD Escherichia coli
P45420 3.08e-26 119 22 25 727 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS13320
Feature type CDS
Gene -
Product fimbria/pilus outer membrane usher protein
Location 292172 - 294724 (strand: 1)
Length 2553 (nucleotides) / 850 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_6
Orthogroup size 22
N. genomes 6

Actions

Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07347 outer membrane usher protein Two-component system
Pertussis		 -

Protein Sequence

MKKYKMKNKHFFVLTIIPVSVFLSVNQAFADDFFDPAFLSFGENTVSDLDLSSYEKDDQLPLGEYYVNISVNSRFNSEELITFYQDKENKLAPLLTPLQLMSFGVNIKDTPYLKDLPEDKPVINLSELIPDYKFTFNENKLDLLFSFPQIVMRNKDNGSTDPLLWDDGVPALILNYNIMGGKTGSNGTKSENLFTQLYGGLNFQAWRLRMNASNSYYKSTSDGKTTSNNNHDINNVRLYRDIKSLKSNLKIGEIFPSLDIFESFPIKGISLSSSNDMIPESLRGFAPTITGYANSNATVTVSQNNNVIYQTYVSPGPFSIDDIRQSQLSGELEITITEADGTVRKQLYASSGLPVMEREGGFKYEASSGEYNSKNSKKKSFLLGAFSYGLPKNITVYGGALISEKYYSTVMGVGTSLGKFGALSVDITTSDTTPENTHQREKGQSYRIKYAKNMLSTGTTIDLAAYRYSTENYHDFNEINNFQYTDNAWANGKQRSSLRLSVSQQLGKYGSVFVAGNREDFWDNKTVNNNLSMGYNGSLNNINYSLSYSIEKKKGDNNTWPEDRRWTANIQIPLSVMSNNEFAKNSSASYSLNGSRNASTTNNLGLRTSFLDNKVGLSLNQDYSHNSDQTNNTNLNANYTGNITNSSVGYSYGNNYNSLNANINGTVVLHEKGVIFSKQAGNTALVLIDAPGAGGTKINTGLSDINSRGQALVFAGNPYNKNSVALDVTTLPDNVEVDSSVINVYPTKDAVVLAKFKTKQGYQVLFTLSHNGSELPFGTIVSAEGDNTNSGIVGDSGQVYLSGLPAEGTILAKWGNSANQSCRSNYNLKKDSTSIDDDNHFIKEVSLQCQ

Flanking regions ( +/- flanking 50bp)

AAACACAATTAATAAAAGATATTATTTTTAACACAAGGGAATACTTAAAAATGAAAAAATATAAAATGAAAAATAAGCATTTTTTTGTATTAACAATAATACCGGTATCTGTGTTTTTATCTGTAAACCAGGCTTTTGCAGATGATTTCTTTGATCCTGCCTTTTTATCCTTTGGTGAGAATACCGTATCTGACCTGGATTTATCCAGTTATGAAAAAGATGACCAACTCCCTCTGGGTGAATATTACGTCAATATTAGTGTTAATAGCAGATTTAACAGTGAAGAACTAATTACGTTCTACCAGGATAAAGAAAATAAACTAGCGCCTCTATTAACGCCATTACAGTTAATGAGCTTCGGTGTCAATATAAAAGATACGCCTTATCTGAAAGATTTACCCGAAGATAAACCTGTTATCAATTTATCTGAATTAATACCTGACTATAAATTTACATTTAATGAAAACAAACTGGATCTGCTGTTCAGCTTTCCTCAGATTGTAATGAGAAACAAAGATAATGGATCAACTGACCCATTGCTTTGGGATGACGGAGTACCTGCCCTGATACTAAACTATAATATTATGGGTGGGAAAACTGGATCAAATGGTACTAAATCTGAAAATTTATTTACACAACTATATGGTGGTTTAAATTTTCAGGCATGGCGACTGAGGATGAATGCCAGTAATAGCTACTATAAATCAACTTCAGATGGAAAAACCACATCCAATAACAATCATGATATTAATAATGTCAGGTTATACCGTGACATTAAATCATTAAAATCCAATCTTAAAATTGGTGAAATTTTTCCTTCCTTAGATATTTTTGAGTCATTTCCTATCAAAGGAATATCATTATCAAGCAGTAACGACATGATCCCGGAGTCACTGCGCGGATTTGCGCCGACTATCACCGGTTATGCCAACAGTAATGCTACCGTCACGGTCAGCCAGAATAATAATGTCATTTATCAGACTTATGTTTCTCCCGGTCCCTTTTCGATTGATGATATCCGGCAATCGCAGTTATCCGGTGAGTTAGAAATAACAATAACAGAAGCCGACGGTACGGTCAGAAAACAGCTTTATGCATCCAGCGGACTCCCGGTTATGGAGCGGGAAGGCGGATTTAAGTATGAAGCGTCGTCAGGGGAATATAACAGTAAAAACTCAAAGAAGAAGTCATTCCTTCTTGGTGCATTCAGTTATGGTTTACCAAAAAATATCACCGTATATGGTGGCGCCCTGATTTCAGAAAAATATTACTCCACTGTTATGGGGGTTGGTACATCACTGGGTAAATTCGGCGCGCTGTCTGTTGATATTACGACATCAGATACAACACCGGAAAATACACATCAGCGGGAAAAAGGTCAGTCTTACCGGATAAAATATGCAAAAAACATGTTATCTACCGGGACTACTATTGACCTGGCGGCGTACCGTTACTCGACTGAAAACTATCATGATTTCAATGAAATTAATAATTTTCAGTATACAGATAATGCATGGGCAAACGGAAAACAGCGCTCAAGTTTACGCCTGAGTGTCAGCCAGCAGCTGGGTAAATATGGATCTGTTTTTGTTGCCGGTAACCGTGAAGACTTCTGGGATAATAAAACCGTAAATAACAATTTATCAATGGGTTATAACGGATCGCTCAATAATATAAATTACTCGCTTTCTTACAGTATTGAAAAAAAGAAAGGCGATAACAATACCTGGCCGGAAGACAGGCGCTGGACTGCCAATATACAGATCCCTTTATCTGTGATGAGTAATAATGAATTTGCAAAAAATTCATCAGCTTCCTATTCACTCAATGGCAGCAGGAACGCATCGACAACGAACAATCTTGGTTTAAGAACCTCTTTTCTTGATAATAAAGTGGGTTTGTCATTAAATCAGGACTACTCACATAACAGCGACCAGACTAATAATACAAACCTAAATGCTAATTATACCGGAAACATAACAAACAGCAGTGTTGGTTATAGTTATGGAAATAATTATAACTCATTGAATGCCAACATTAACGGTACTGTTGTTCTCCATGAAAAAGGCGTGATTTTTTCTAAACAGGCGGGCAATACGGCATTAGTCCTTATTGATGCACCCGGCGCCGGTGGTACAAAAATTAATACCGGGCTTTCCGATATTAATAGTCGTGGACAGGCATTAGTTTTTGCCGGTAATCCCTATAATAAAAATTCAGTTGCATTAGATGTCACAACACTGCCGGATAATGTGGAAGTGGACAGCTCTGTTATTAATGTTTATCCGACAAAAGATGCCGTTGTTCTCGCGAAATTTAAAACGAAGCAGGGCTACCAGGTACTCTTTACATTAAGCCATAACGGAAGTGAATTACCATTTGGCACAATTGTCTCCGCTGAAGGTGATAATACAAATAGCGGGATTGTCGGTGACAGCGGACAGGTTTATCTTTCCGGTCTTCCCGCTGAAGGAACTATACTGGCAAAATGGGGTAATTCGGCTAATCAGTCCTGTCGCAGCAATTACAACCTGAAAAAAGACAGTACATCAATTGATGACGATAATCATTTTATTAAAGAAGTTTCACTACAGTGTCAGTAAAACTTATCAGAAAATGGTACTTATTATGAAATATCTTTTTATAACATTAT