Homologs in group_3098

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_19305 FBDBKF_19305 76.8 Morganella morganii S1 blaDHA-1 extended-spectrum class C beta-lactamase DHA-1
EHELCC_07590 EHELCC_07590 76.8 Morganella morganii S2 blaDHA-1 extended-spectrum class C beta-lactamase DHA-1
NLDBIP_07915 NLDBIP_07915 76.8 Morganella morganii S4 blaDHA-1 extended-spectrum class C beta-lactamase DHA-1
LHKJJB_07450 LHKJJB_07450 76.8 Morganella morganii S3 blaDHA-1 extended-spectrum class C beta-lactamase DHA-1
HKOGLL_03480 HKOGLL_03480 76.8 Morganella morganii S5 blaDHA-1 extended-spectrum class C beta-lactamase DHA-1

Distribution of the homologs in the orthogroup group_3098

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3098

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P94958 0.0 605 77 0 379 3 ampC Beta-lactamase Morganella morganii
P00811 4.11e-154 442 57 1 376 1 ampC Beta-lactamase Escherichia coli (strain K12)
P05364 2.56e-149 430 54 1 380 1 ampC Beta-lactamase Enterobacter cloacae
P05193 8.98e-149 428 54 1 380 1 ampC Beta-lactamase Citrobacter freundii
Q48434 1.22e-148 428 55 1 380 1 blaCMY-2 Beta-lactamase CMY-2 Klebsiella pneumoniae
O53044 3.26e-148 427 55 1 380 3 blaCMY-4 Beta-lactamase CMY-4 Klebsiella pneumoniae
P45460 2.66e-127 374 51 4 387 3 ampC Beta-lactamase Yersinia enterocolitica
P85302 9.79e-123 361 48 4 360 1 ampC Beta-lactamase Pseudomonas fluorescens
P24735 1.2e-113 340 44 5 382 1 ampC Beta-lactamase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P71420 1.7e-102 310 44 4 351 1 blaCMY-1 Beta-lactamase CMY-1 Klebsiella pneumoniae
Q99QC1 3.26e-101 307 43 4 351 1 blaCMY-10 Beta-lactamase CMY-10 Klebsiella aerogenes
O05465 3.97e-96 295 41 4 375 1 ampC Beta-lactamase Psychrobacter immobilis
Q48743 8.32e-87 270 38 5 376 3 None Beta-lactamase Lysobacter lactamgenus
P18539 7.45e-86 268 38 7 388 3 ampC Beta-lactamase Serratia marcescens
O69773 9.45e-82 258 36 5 373 3 ampC Beta-lactamase Providencia stuartii
Q9KJ74 5.69e-14 76 24 12 354 4 flp Protein flp Staphylococcus aureus
Q2FVH6 5.69e-14 76 24 12 354 4 flp Protein flp Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q7A3Q5 1.08e-13 75 24 12 354 1 flp Protein flp Staphylococcus aureus (strain N315)
Q99RJ0 1.08e-13 75 24 12 354 3 flp Protein flp Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HDB2 1.2e-13 75 24 12 354 4 flp Protein flp Staphylococcus aureus (strain COL)
Q6GDZ1 1.29e-13 75 24 12 354 3 flp Protein flp Staphylococcus aureus (strain MRSA252)
Q6G6M9 4.36e-13 73 24 12 354 3 flp Protein flp Staphylococcus aureus (strain MSSA476)
Q8NUZ4 4.48e-13 73 24 12 354 3 flp Protein flp Staphylococcus aureus (strain MW2)
P0AD70 9.69e-12 69 24 11 328 1 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH Escherichia coli (strain K12)
P0AD71 9.69e-12 69 24 11 328 3 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH Escherichia coli O157:H7
A0A2V5GVB6 5.89e-10 64 24 9 350 1 ungD Unguisins hydrolase ungD Aspergillus violaceofuscus (strain CBS 115571)
P32959 6.22e-10 63 22 9 295 1 pbpE Penicillin-binding protein 4* Bacillus subtilis (strain 168)
P15555 6.68e-09 60 24 10 317 1 None D-alanyl-D-alanine carboxypeptidase Streptomyces sp. (strain R61)
Q9KX40 4.5e-07 55 30 3 117 1 estB Esterase EstB Burkholderia gladioli
P9WLZ3 6.81e-06 51 22 7 235 1 Rv1367c Protein Rv1367c Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WLZ2 6.81e-06 51 22 7 235 4 MT1414 Uncharacterized protein MT1414 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q06317 0.000128 47 21 10 296 3 pbp Penicillin-binding protein 4 Amycolatopsis lactamdurans
B5R4I5 0.000351 46 22 8 260 3 yfeW Putative D-alanyl-D-alanine carboxypeptidase Salmonella enteritidis PT4 (strain P125109)
B4TR50 0.00068 45 22 8 260 3 yfeW Putative D-alanyl-D-alanine carboxypeptidase Salmonella schwarzengrund (strain CVM19633)
Q8Z4S7 0.000736 45 22 8 260 3 yfeW Putative D-alanyl-D-alanine carboxypeptidase Salmonella typhi
B5BB26 0.000743 45 22 8 260 3 yfeW Putative D-alanyl-D-alanine carboxypeptidase Salmonella paratyphi A (strain AKU_12601)
Q5PCQ2 0.000743 45 22 8 260 3 yfeW Putative D-alanyl-D-alanine carboxypeptidase Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q8ZN80 0.000847 45 22 8 260 3 yfeW Putative D-alanyl-D-alanine carboxypeptidase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
B5F0K5 0.000878 44 21 8 260 3 yfeW Putative D-alanyl-D-alanine carboxypeptidase Salmonella agona (strain SL483)
C0PZ64 0.001 44 22 8 260 3 yfeW Putative D-alanyl-D-alanine carboxypeptidase Salmonella paratyphi C (strain RKS4594)
A9N307 0.001 44 22 8 260 3 yfeW Putative D-alanyl-D-alanine carboxypeptidase Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
B4T0K5 0.001 44 22 8 260 3 yfeW Putative D-alanyl-D-alanine carboxypeptidase Salmonella newport (strain SL254)
B5FQG8 0.001 44 22 8 260 3 yfeW Putative D-alanyl-D-alanine carboxypeptidase Salmonella dublin (strain CT_02021853)
Q57LN2 0.001 44 22 8 260 3 yfeW Putative D-alanyl-D-alanine carboxypeptidase Salmonella choleraesuis (strain SC-B67)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS12065
Feature type CDS
Gene ampC
Product class C beta-lactamase
Location 566525 - 567664 (strand: 1)
Length 1140 (nucleotides) / 379 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3098
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF00144 Beta-lactamase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1680 Defense mechanisms (V) V CubicO group peptidase, beta-lactamase class C family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K01467 beta-lactamase class C [EC:3.5.2.6] beta-Lactam resistance
Two-component system		 -

AMR gene Annotation(s)

Gene Description Scope Type Class Subclass HMM
ampC class C beta-lactamase core AMR BETA-LACTAM BETA-LACTAM NF033085 

Protein Sequence

MTKSLSATLVSALLVFSVPGLSIAADVAATVNNTIEPLLKQQAIPGMAVAVTVQGKQYFFNYGLADVQAKQPVTENTLFELGSVSKTFTGVLGGISVAKNEISLSDPAIKYWPELNSAQWKKITLLDLATYTAGGLPLQVPSEVVTRQDLLYFYQQWQPQWTPGDMRLYANSSIGLFGVLTAKAIDMPYEKALQTRIFTPLALSHTFITVPDAAKNQYAYGYKNNEPVRLSPEQLDAESYGVKSSSKDMLNWIEANLNPSETGNSDLENGIKVAQTRYYKTAAINQGLGWEMYDWPQQSDMIAGGVTNEVALEPHPVTSHGVRPYKKASWVHKTGATNGFGAYVAFIPEKQIGIVILANKNYPNTERVKAAQAILSALE

Flanking regions ( +/- flanking 50bp)

TTCTGACGATACTTCAGCCCGGGATCCATATACATAAGAGATTAATTATGATGACAAAATCGTTATCCGCAACACTGGTTTCGGCACTGCTGGTATTTTCAGTACCGGGGCTGTCAATCGCGGCAGATGTCGCTGCCACGGTTAATAACACTATTGAGCCATTACTGAAGCAGCAGGCAATTCCGGGTATGGCAGTAGCTGTTACCGTGCAGGGAAAACAGTATTTCTTTAATTACGGGCTTGCTGATGTACAGGCAAAACAGCCGGTAACAGAAAATACACTATTTGAGCTTGGATCTGTAAGCAAAACTTTCACAGGTGTGCTTGGCGGCATATCAGTGGCAAAAAATGAGATCTCACTGAGTGACCCTGCCATAAAATACTGGCCGGAACTTAATTCTGCGCAATGGAAGAAAATCACCTTACTGGATTTGGCAACTTACACGGCGGGCGGATTGCCGTTACAGGTGCCGTCTGAGGTAGTCACCCGGCAGGATTTACTGTATTTTTATCAGCAGTGGCAGCCACAATGGACACCGGGAGATATGCGTCTGTATGCAAACAGCAGTATCGGGCTGTTTGGTGTCCTGACCGCAAAAGCCATTGATATGCCATATGAAAAAGCACTTCAGACACGTATTTTTACACCACTGGCACTGTCACATACATTTATTACTGTGCCGGATGCGGCAAAGAATCAGTATGCCTATGGTTATAAAAACAATGAGCCGGTGCGCCTGTCTCCGGAGCAGCTTGATGCCGAATCTTATGGCGTGAAGTCATCCTCAAAAGACATGCTTAACTGGATAGAAGCCAATCTGAACCCGTCTGAAACGGGTAACAGTGACCTGGAAAACGGGATCAAAGTTGCACAGACGCGTTACTACAAAACAGCTGCAATTAATCAGGGACTAGGTTGGGAGATGTATGACTGGCCGCAGCAATCAGATATGATCGCGGGCGGCGTGACCAATGAGGTGGCATTAGAACCGCATCCGGTAACAAGTCACGGCGTCCGGCCATACAAAAAAGCCTCATGGGTGCATAAAACCGGTGCAACAAACGGGTTTGGTGCTTATGTGGCATTTATTCCGGAAAAACAGATCGGAATTGTTATCCTTGCGAATAAAAACTACCCGAATACGGAAAGAGTGAAAGCCGCACAGGCTATTTTGAGTGCGCTGGAGTAAGCGGGTTTTAGAACATAAAGGCCACTCATTATGAGTGGCCTTTATGTTTG