COG1680
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1680, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries
within the database. 24 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.
Description
Description |
CubicO group peptidase, beta-lactamase class C family |
Function(s) descr. |
Defense mechanisms (V) |
Occurence in the database
COG1680 is associated with 24 different proteins (see tab "Protein list" and "Profile") |
The 24 proteins are classified into 4 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_3213 |
FBDBKF_02785 |
253702 |
254751 |
1 |
|
Serine hydrolase |
Morganella morganii S1 |
1 |
group_1434 |
FBDBKF_08870 |
155579 |
156802 |
-1 |
ampH |
D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH |
Morganella morganii S1 |
2 |
group_2892 |
FBDBKF_11955 |
38641 |
39669 |
1 |
ampC |
CubicO group peptidase, beta-lactamase class C family |
Morganella morganii S1 |
3 |
group_3098 |
FBDBKF_19305 |
7814 |
8953 |
1 |
blaDHA-1 |
extended-spectrum class C beta-lactamase DHA-1 |
Morganella morganii S1 |
4 |
group_3213 |
EHELCC_03255 |
641522 |
642571 |
1 |
|
Serine hydrolase |
Morganella morganii S2 |
5 |
group_3098 |
EHELCC_07590 |
254905 |
256044 |
1 |
blaDHA-1 |
extended-spectrum class C beta-lactamase DHA-1 |
Morganella morganii S2 |
6 |
group_1434 |
EHELCC_12655 |
6923 |
8146 |
1 |
ampH |
D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH |
Morganella morganii S2 |
7 |
group_2892 |
EHELCC_14350 |
95036 |
96064 |
-1 |
ampC |
CubicO group peptidase, beta-lactamase class C family |
Morganella morganii S2 |
8 |
group_3213 |
NLDBIP_00205 |
37565 |
38614 |
-1 |
|
Serine hydrolase |
Morganella morganii S4 |
9 |
group_3098 |
NLDBIP_07915 |
254778 |
255917 |
1 |
blaDHA-1 |
extended-spectrum class C beta-lactamase DHA-1 |
Morganella morganii S4 |
10 |
group_1434 |
NLDBIP_12995 |
6923 |
8146 |
1 |
ampH |
D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH |
Morganella morganii S4 |
11 |
group_2892 |
NLDBIP_15445 |
98973 |
100001 |
-1 |
ampC |
CubicO group peptidase, beta-lactamase class C family |
Morganella morganii S4 |
12 |
group_3213 |
LHKJJB_01830 |
354071 |
355120 |
1 |
|
Serine hydrolase |
Morganella morganii S3 |
13 |
group_3098 |
LHKJJB_07450 |
218524 |
219663 |
1 |
blaDHA-1 |
extended-spectrum class C beta-lactamase DHA-1 |
Morganella morganii S3 |
14 |
group_1434 |
LHKJJB_13560 |
154297 |
155520 |
-1 |
ampH |
D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH |
Morganella morganii S3 |
15 |
group_2892 |
LHKJJB_15165 |
38641 |
39669 |
1 |
ampC |
CubicO group peptidase, beta-lactamase class C family |
Morganella morganii S3 |
16 |
group_3213 |
HKOGLL_01870 |
359582 |
360631 |
1 |
|
Serine hydrolase |
Morganella morganii S5 |
17 |
group_3098 |
HKOGLL_03480 |
13724 |
14863 |
-1 |
blaDHA-1 |
extended-spectrum class C beta-lactamase DHA-1 |
Morganella morganii S5 |
18 |
group_1434 |
HKOGLL_11470 |
6923 |
8146 |
1 |
ampH |
D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH |
Morganella morganii S5 |
19 |
group_2892 |
HKOGLL_14285 |
25304 |
26332 |
1 |
ampC |
CubicO group peptidase, beta-lactamase class C family |
Morganella morganii S5 |
20 |
group_1434 |
F4V73_RS10075 |
123022 |
124245 |
-1 |
ampH |
D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH |
Morganella psychrotolerans |
21 |
group_3098 |
F4V73_RS12065 |
566525 |
567664 |
1 |
ampC |
class C beta-lactamase |
Morganella psychrotolerans |
22 |
group_2892 |
F4V73_RS14700 |
176816 |
177844 |
-1 |
|
serine hydrolase domain-containing protein |
Morganella psychrotolerans |
23 |
group_1434 |
PMI_RS17280 |
3795147 |
3796364 |
-1 |
ampH |
D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH |
Proteus mirabilis HI4320 |