Homologs in group_735

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03250 FBDBKF_03250 91.2 Morganella morganii S1 rpoN RNA polymerase factor sigma-54
EHELCC_07285 EHELCC_07285 91.2 Morganella morganii S2 rpoN RNA polymerase factor sigma-54
NLDBIP_07610 NLDBIP_07610 91.2 Morganella morganii S4 rpoN RNA polymerase factor sigma-54
LHKJJB_07145 LHKJJB_07145 91.2 Morganella morganii S3 rpoN RNA polymerase factor sigma-54
HKOGLL_03785 HKOGLL_03785 91.2 Morganella morganii S5 rpoN RNA polymerase factor sigma-54
PMI_RS18150 PMI_RS18150 73.0 Proteus mirabilis HI4320 rpoN RNA polymerase factor sigma-54

Distribution of the homologs in the orthogroup group_735

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_735

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P24255 0.0 739 74 2 480 1 rpoN RNA polymerase sigma-54 factor Escherichia coli (strain K12)
P06223 0.0 733 73 1 478 1 rpoN RNA polymerase sigma-54 factor Klebsiella oxytoca
P26979 0.0 722 73 1 478 3 rpoN RNA polymerase sigma-54 factor Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
O08429 0.0 592 60 4 490 3 rpoN RNA polymerase sigma-54 factor Vibrio anguillarum
Q9S0L2 0.0 576 61 5 496 3 rpoN RNA polymerase sigma-54 factor Shewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12)
P49988 0.0 528 55 6 499 1 rpoN RNA polymerase sigma-54 factor Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
A0A0H2ZGR9 0.0 528 55 6 499 3 rpoN RNA polymerase sigma-54 factor Pseudomonas aeruginosa (strain UCBPP-PA14)
P0A172 7.72e-179 513 53 6 499 3 rpoN RNA polymerase sigma-54 factor Pseudomonas putida
P0A171 7.72e-179 513 53 6 499 1 rpoN RNA polymerase sigma-54 factor Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
P08623 8.46e-177 508 53 5 505 3 rpoN RNA polymerase sigma-54 factor Azotobacter vinelandii
P24695 1.82e-155 453 49 8 486 3 rpoN RNA polymerase sigma-54 factor Acidithiobacillus ferridurans
P33983 3.77e-145 427 49 3 486 3 rpoN RNA polymerase sigma-54 factor Acinetobacter guillouiae
P28615 6.41e-135 401 46 5 497 3 rpoN RNA polymerase sigma-54 factor Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
P77998 1.95e-123 371 42 7 487 3 rpoN RNA polymerase sigma-54 factor Xanthomonas euvesicatoria
Q03408 1.99e-100 313 38 13 505 3 rpoN RNA polymerase sigma-54 factor Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15)
P30332 2.35e-99 310 39 9 479 2 rpoN1 RNA polymerase sigma-54 factor 1 Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
P22881 6.63e-94 296 36 14 519 3 rpoN RNA polymerase sigma-54 factor Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P30333 3.88e-93 295 36 12 519 2 rpoN2 RNA polymerase sigma-54 factor 2 Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
P17263 9.17e-92 291 36 12 519 3 rpoN RNA polymerase sigma-54 factor Rhizobium meliloti (strain 1021)
P49989 1.49e-90 288 36 13 524 3 rpoN RNA polymerase sigma-54 factor Rhizobium etli
P33985 5.95e-88 281 35 11 517 3 rpoN RNA polymerase sigma-54 factor Rhizobium meliloti
P33984 1.63e-82 267 37 15 513 3 rpoN RNA polymerase sigma-54 factor Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / LMG 6465 / NBRC 14845 / NCIMB 13405 / ORS 571)
P38944 2.9e-71 236 30 8 482 3 rpoN Putative RNA polymerase sigma-54 factor Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680)
P24219 1.34e-70 233 32 8 478 1 sigL RNA polymerase sigma-54 factor Bacillus subtilis (strain 168)
Q01194 1.49e-57 199 31 9 467 3 rpoN RNA polymerase sigma-54 factor Cereibacter sphaeroides
D5ANH9 1.21e-46 170 31 7 347 3 rpoN RNA polymerase sigma-54 factor Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
P0CY59 2.43e-41 155 30 5 343 3 rpoN RNA polymerase sigma-54 factor Rhodobacter capsulatus
Q9ZLC8 1.44e-35 139 29 13 352 3 rpoN RNA polymerase sigma-54 factor Helicobacter pylori (strain J99 / ATCC 700824)
P56143 7.15e-35 137 29 12 348 3 rpoN RNA polymerase sigma-54 factor Helicobacter pylori (strain ATCC 700392 / 26695)
O83149 9.43e-30 124 25 14 496 3 rpoN RNA polymerase sigma-54 factor Treponema pallidum (strain Nichols)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS11670
Feature type CDS
Gene rpoN
Product RNA polymerase factor sigma-54
Location 484558 - 485994 (strand: -1)
Length 1437 (nucleotides) / 478 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_735
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00309 Sigma-54 factor, Activator interacting domain (AID)
PF04552 Sigma-54, DNA binding domain
PF04963 Sigma-54 factor, core binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1508 Transcription (K) K DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03092 RNA polymerase sigma-54 factor Two-component system
Flagellar assembly
Biofilm formation - Vibrio cholerae		 -

Protein Sequence

MKQSLQLKLSQQLAMTPQLQQAIRLLQLSTLELQQEIREALESNPLLELDDNEQEIDTPAGAETQKEMDSVEALEQTVLPEDLPLDTQWDEIYTAGSPSGTGSDYSDDELPLYQGETTETLQDYLIWQARLTPFTETDAAIAFSVIDAIDETGYLTVPVEDIRLSIGDDEVTTEDVEAVLKRIQRFDPVGVGARDLRECLLVQLKMLPETTPSLKDALVIVDKHLTLLGNRDFRTLGRVTKLKEDALKSAIDLIQTMEPRPGLVVNTGESEYVIPDVLVRKHGEQWAVELNSDSLPRLRVNSHYAALGSRTRNESDSQFIRNNLQEAKWLIKSLESRNDTLLRVSTCIVEEQQAFFEHGAEYMKPMVLADIALRVEMHESTISRVTTQKFLHSPRGIFELKYFFSSHVSTDSGGEASSTAIRALVKKLVAAENPVKPLSDSKLTDILAEQGIQVARRTVAKYRESLSIPPSNQRKQLV

Flanking regions ( +/- flanking 50bp)

TTTAGGCGAAGGTTTCCGCCTGTAATTTCCGTAAGGAGCCCGTGTCCGCAATGAAGCAGAGTCTGCAACTAAAACTCAGCCAGCAACTGGCGATGACGCCACAACTTCAGCAGGCTATCCGTTTGTTGCAGCTCTCCACGCTGGAACTTCAGCAGGAGATCCGCGAGGCGCTGGAATCTAATCCGCTTCTGGAACTCGATGATAATGAGCAGGAAATAGACACGCCTGCGGGTGCTGAAACACAGAAAGAAATGGACAGCGTTGAAGCACTTGAGCAAACCGTGCTGCCTGAAGACCTTCCGCTGGATACACAGTGGGACGAAATTTACACCGCCGGCTCGCCATCCGGTACCGGCAGTGACTACAGTGATGATGAACTTCCGCTCTATCAGGGCGAAACCACTGAAACGTTACAGGATTATCTTATCTGGCAGGCCCGCCTGACGCCCTTCACCGAAACCGACGCGGCAATTGCCTTCTCCGTTATCGATGCCATTGATGAAACCGGCTATCTGACTGTTCCGGTGGAAGATATCCGCCTGAGTATCGGGGATGATGAGGTTACCACCGAAGATGTCGAAGCCGTGCTCAAACGCATTCAGCGTTTTGATCCCGTCGGCGTTGGTGCCCGTGATCTGCGTGAATGCCTGCTGGTTCAGCTGAAAATGTTGCCGGAAACCACACCAAGCCTGAAAGATGCACTTGTGATTGTGGATAAACACCTTACATTGCTGGGAAACCGGGACTTCCGTACGCTGGGACGGGTAACAAAATTAAAAGAAGACGCATTAAAATCTGCCATTGATCTGATTCAGACCATGGAACCGCGTCCGGGTCTGGTAGTCAACACCGGTGAATCAGAGTATGTTATTCCTGACGTCCTTGTCAGAAAACACGGGGAGCAGTGGGCCGTTGAGCTCAACTCAGACAGCCTTCCCCGTCTGCGGGTAAACAGCCATTATGCCGCACTGGGTTCGCGAACCCGCAATGAAAGTGACAGTCAGTTTATCCGTAACAATTTGCAGGAAGCAAAGTGGCTCATTAAAAGTCTGGAAAGCCGGAACGACACTCTGCTCAGGGTATCGACCTGCATTGTTGAAGAACAACAGGCCTTCTTTGAGCACGGCGCCGAGTATATGAAACCCATGGTGCTGGCTGATATTGCACTGCGGGTTGAAATGCATGAATCAACAATTTCCCGTGTTACCACGCAAAAATTTCTGCACAGTCCGCGGGGTATTTTTGAACTGAAGTACTTTTTCTCCAGCCATGTGAGTACCGACAGCGGAGGCGAAGCCTCCTCCACGGCCATCCGGGCTCTGGTGAAAAAACTGGTTGCCGCCGAAAATCCGGTAAAACCACTCAGTGACAGTAAGCTGACGGACATACTTGCCGAACAGGGTATTCAGGTAGCCAGACGCACTGTTGCGAAATATCGTGAGTCGTTATCCATCCCACCCTCAAATCAGCGTAAGCAGCTGGTCTGATATTATTTGAGAAGGAAGACACTATGGAATTACAAATTACTGGCCACAAC