K03092


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Kegg Orthologs K03092, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Kegg Orthologs within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Kegg Ortholog(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Kegg Orthologs has been clustered.
In red the Kegg Orthologs with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Kegg Orthologs prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Kegg Orthologs.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Kegg Orthologs prediction.

Description

External link K03092
KO K03092
Description RNA polymerase sigma-54 factor

Occurence in the database

K03092 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_735 PMI_RS18150 3985286 3986761 -1 rpoN RNA polymerase factor sigma-54 Proteus mirabilis HI4320
1 group_735 FBDBKF_03250 50651 52087 1 rpoN RNA polymerase factor sigma-54 Morganella morganii S1
2 group_735 EHELCC_07285 195016 196452 -1 rpoN RNA polymerase factor sigma-54 Morganella morganii S2
3 group_735 NLDBIP_07610 194889 196325 -1 rpoN RNA polymerase factor sigma-54 Morganella morganii S4
4 group_735 LHKJJB_07145 158635 160071 -1 rpoN RNA polymerase factor sigma-54 Morganella morganii S3
5 group_735 HKOGLL_03785 73316 74752 1 rpoN RNA polymerase factor sigma-54 Morganella morganii S5
6 group_735 F4V73_RS11670 484558 485994 -1 rpoN RNA polymerase factor sigma-54 Morganella psychrotolerans