Homologs in group_735

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03250 FBDBKF_03250 76.4 Morganella morganii S1 rpoN RNA polymerase factor sigma-54
EHELCC_07285 EHELCC_07285 76.4 Morganella morganii S2 rpoN RNA polymerase factor sigma-54
NLDBIP_07610 NLDBIP_07610 76.4 Morganella morganii S4 rpoN RNA polymerase factor sigma-54
LHKJJB_07145 LHKJJB_07145 76.4 Morganella morganii S3 rpoN RNA polymerase factor sigma-54
HKOGLL_03785 HKOGLL_03785 76.4 Morganella morganii S5 rpoN RNA polymerase factor sigma-54
F4V73_RS11670 F4V73_RS11670 73.0 Morganella psychrotolerans rpoN RNA polymerase factor sigma-54

Distribution of the homologs in the orthogroup group_735

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_735

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P06223 0.0 731 72 3 491 1 rpoN RNA polymerase sigma-54 factor Klebsiella oxytoca
P24255 0.0 729 72 2 491 1 rpoN RNA polymerase sigma-54 factor Escherichia coli (strain K12)
P26979 0.0 724 73 3 491 3 rpoN RNA polymerase sigma-54 factor Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
O08429 0.0 621 62 5 492 3 rpoN RNA polymerase sigma-54 factor Vibrio anguillarum
Q9S0L2 0.0 579 61 4 499 3 rpoN RNA polymerase sigma-54 factor Shewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12)
P49988 0.0 551 56 7 505 1 rpoN RNA polymerase sigma-54 factor Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
A0A0H2ZGR9 0.0 551 56 7 505 3 rpoN RNA polymerase sigma-54 factor Pseudomonas aeruginosa (strain UCBPP-PA14)
P0A172 0.0 540 55 7 502 3 rpoN RNA polymerase sigma-54 factor Pseudomonas putida
P0A171 0.0 540 55 7 502 1 rpoN RNA polymerase sigma-54 factor Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
P08623 0.0 538 57 8 508 3 rpoN RNA polymerase sigma-54 factor Azotobacter vinelandii
P24695 5.21e-152 444 48 8 493 3 rpoN RNA polymerase sigma-54 factor Acidithiobacillus ferridurans
P33983 1.1e-142 421 46 5 499 3 rpoN RNA polymerase sigma-54 factor Acinetobacter guillouiae
P28615 1.1e-125 378 44 8 503 3 rpoN RNA polymerase sigma-54 factor Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
P77998 1.68e-116 354 41 6 492 3 rpoN RNA polymerase sigma-54 factor Xanthomonas euvesicatoria
P30333 4.15e-99 311 37 11 519 2 rpoN2 RNA polymerase sigma-54 factor 2 Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
Q03408 5.15e-99 310 37 10 500 3 rpoN RNA polymerase sigma-54 factor Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15)
P30332 1.68e-98 308 38 12 491 2 rpoN1 RNA polymerase sigma-54 factor 1 Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
P22881 8.06e-93 294 37 13 517 3 rpoN RNA polymerase sigma-54 factor Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P49989 1.41e-92 293 37 13 523 3 rpoN RNA polymerase sigma-54 factor Rhizobium etli
P17263 2.07e-91 290 37 13 518 3 rpoN RNA polymerase sigma-54 factor Rhizobium meliloti (strain 1021)
P33985 6.86e-88 281 36 13 528 3 rpoN RNA polymerase sigma-54 factor Rhizobium meliloti
P33984 2.02e-85 275 38 13 508 3 rpoN RNA polymerase sigma-54 factor Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / LMG 6465 / NBRC 14845 / NCIMB 13405 / ORS 571)
P24219 3.78e-64 217 32 4 375 1 sigL RNA polymerase sigma-54 factor Bacillus subtilis (strain 168)
P38944 6.62e-64 217 29 8 493 3 rpoN Putative RNA polymerase sigma-54 factor Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680)
Q01194 3.23e-55 193 31 14 484 3 rpoN RNA polymerase sigma-54 factor Cereibacter sphaeroides
D5ANH9 1.61e-50 181 32 7 345 3 rpoN RNA polymerase sigma-54 factor Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
P0CY59 3.71e-45 166 31 6 344 3 rpoN RNA polymerase sigma-54 factor Rhodobacter capsulatus
P56143 5.3e-39 149 31 16 367 3 rpoN RNA polymerase sigma-54 factor Helicobacter pylori (strain ATCC 700392 / 26695)
Q9ZLC8 1.47e-38 148 31 14 366 3 rpoN RNA polymerase sigma-54 factor Helicobacter pylori (strain J99 / ATCC 700824)
O83149 7.73e-26 113 26 9 363 3 rpoN RNA polymerase sigma-54 factor Treponema pallidum (strain Nichols)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS18150
Feature type CDS
Gene rpoN
Product RNA polymerase factor sigma-54
Location 3985286 - 3986761 (strand: -1)
Length 1476 (nucleotides) / 491 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_735
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00309 Sigma-54 factor, Activator interacting domain (AID)
PF04552 Sigma-54, DNA binding domain
PF04963 Sigma-54 factor, core binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1508 Transcription (K) K DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03092 RNA polymerase sigma-54 factor Two-component system
Flagellar assembly
Biofilm formation - Vibrio cholerae		 -

Protein Sequence

MKQSLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQEIQQALESNPLLEQEDDQADVTHSDSSSTQESDDSTPDNERDNEVLDTLDALEQKEMPDDLPLDTQWEEIYTAGTPSGTSNDYAADELPLYQGETTASLQDYLTWQADLTPFTDTDRAIATSIIDAVDETGYLTVSTDDILAGMGDDELELDEIEAVLKRIQRFDPVGVAARDLKECLLIQLSTFPTNTPYLKETQLVIEHYLALLGNRDFRQLMRHTKLREETLKVVIETIQSLDPKPGLSIDTEESQYVIPDVLVKKSGEHWQVELNTDSIPRLRINETYAALGQSAQNESDGKFIRDNLQEAKWLIKSLESRNETLLKVAHCIVDTQQAFFEFGEEHMKPLVLADIAEQVEMHESTISRVTTQKYLHCPRGIFELKYFFSSHVNTDNGGEASSTAIRALVKKLIAAENPAKPLSDSKLANMLAELGIQVARRTVAKYRESLSIPPSNQRKELV

Flanking regions ( +/- flanking 50bp)

CACTTTTATTTCGTCACGGATGACAACATAAGAGGATCCATCGCATCACTATGAAACAAAGTCTGCAACTTCGTCTTAGTCAGCAATTGGCCATGACGCCACAGCTCCAACAGGCTATTCGTTTGTTGCAACTTTCTACGCTTGAATTACAACAAGAAATTCAACAAGCCCTTGAATCTAACCCATTGCTTGAACAAGAAGACGATCAAGCGGATGTAACGCATTCTGATAGCTCATCAACACAAGAGAGTGATGATAGTACACCAGACAATGAGCGTGATAATGAGGTGTTAGATACCCTAGATGCACTAGAGCAAAAGGAGATGCCTGACGATCTTCCTCTCGATACCCAATGGGAAGAAATTTACACCGCAGGCACCCCTTCAGGCACCAGTAATGATTATGCGGCTGATGAATTACCACTCTATCAAGGTGAAACCACGGCTTCACTGCAAGATTACCTAACTTGGCAAGCTGACCTAACACCTTTTACTGATACTGATCGTGCTATCGCGACAAGCATTATTGATGCTGTCGATGAAACAGGATATTTAACAGTTTCAACAGATGACATTCTTGCCGGAATGGGTGATGATGAGTTAGAGCTTGATGAGATTGAAGCGGTATTAAAGCGTATTCAACGCTTTGATCCCGTAGGTGTCGCTGCCAGAGACTTAAAAGAGTGTCTGTTAATTCAATTGTCGACATTTCCAACTAATACACCTTATTTGAAAGAGACTCAACTTGTTATTGAGCACTATTTAGCGTTATTAGGTAATCGTGATTTTCGCCAATTAATGCGTCACACTAAGCTACGTGAAGAGACATTAAAAGTAGTGATTGAGACCATTCAATCTCTTGATCCAAAACCGGGTTTAAGTATTGATACAGAGGAATCACAGTATGTTATTCCTGATGTACTGGTAAAAAAATCAGGAGAACACTGGCAAGTTGAGTTAAATACGGATAGCATTCCCCGCCTACGCATAAATGAGACTTATGCAGCGCTTGGGCAATCAGCTCAAAACGAAAGCGATGGGAAATTTATTCGTGACAATTTACAAGAGGCTAAATGGCTGATAAAAAGCTTAGAAAGCCGTAATGAGACATTATTAAAAGTCGCTCATTGCATTGTTGACACACAGCAGGCGTTTTTCGAATTCGGTGAAGAGCATATGAAACCCCTTGTTTTGGCCGATATTGCAGAACAGGTTGAGATGCACGAGTCCACCATTTCTCGCGTTACAACGCAAAAATATTTGCATTGTCCTCGGGGAATTTTCGAATTGAAGTATTTTTTCTCAAGCCACGTAAATACTGATAACGGAGGTGAAGCCTCTTCAACAGCAATTCGGGCTTTAGTGAAGAAACTAATCGCAGCAGAAAACCCAGCGAAACCACTAAGTGATAGTAAACTGGCAAATATGCTCGCCGAGCTTGGTATACAGGTTGCTCGACGAACTGTTGCGAAATATAGAGAGTCATTATCCATCCCGCCTTCAAATCAACGTAAAGAGTTGGTTTGAGCATAATTGAGAAGGAAGACACTATGGAACTTCAAATCACTGGTCATAAT