Homologs in group_735

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_07285 EHELCC_07285 100.0 Morganella morganii S2 rpoN RNA polymerase factor sigma-54
NLDBIP_07610 NLDBIP_07610 100.0 Morganella morganii S4 rpoN RNA polymerase factor sigma-54
LHKJJB_07145 LHKJJB_07145 100.0 Morganella morganii S3 rpoN RNA polymerase factor sigma-54
HKOGLL_03785 HKOGLL_03785 100.0 Morganella morganii S5 rpoN RNA polymerase factor sigma-54
F4V73_RS11670 F4V73_RS11670 91.2 Morganella psychrotolerans rpoN RNA polymerase factor sigma-54
PMI_RS18150 PMI_RS18150 76.4 Proteus mirabilis HI4320 rpoN RNA polymerase factor sigma-54

Distribution of the homologs in the orthogroup group_735

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_735

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P06223 0.0 747 75 1 478 1 rpoN RNA polymerase sigma-54 factor Klebsiella oxytoca
P26979 0.0 745 75 2 480 3 rpoN RNA polymerase sigma-54 factor Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P24255 0.0 744 75 1 478 1 rpoN RNA polymerase sigma-54 factor Escherichia coli (strain K12)
O08429 0.0 606 61 4 490 3 rpoN RNA polymerase sigma-54 factor Vibrio anguillarum
Q9S0L2 0.0 564 60 4 496 3 rpoN RNA polymerase sigma-54 factor Shewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12)
P49988 0.0 533 55 6 499 1 rpoN RNA polymerase sigma-54 factor Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
A0A0H2ZGR9 0.0 533 55 6 499 3 rpoN RNA polymerase sigma-54 factor Pseudomonas aeruginosa (strain UCBPP-PA14)
P0A172 0.0 521 54 6 499 3 rpoN RNA polymerase sigma-54 factor Pseudomonas putida
P0A171 0.0 521 54 6 499 1 rpoN RNA polymerase sigma-54 factor Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
P08623 0.0 519 55 7 505 3 rpoN RNA polymerase sigma-54 factor Azotobacter vinelandii
P24695 5.69e-156 454 50 9 488 3 rpoN RNA polymerase sigma-54 factor Acidithiobacillus ferridurans
P33983 1.1e-142 421 49 3 486 3 rpoN RNA polymerase sigma-54 factor Acinetobacter guillouiae
P28615 3.35e-136 404 46 5 497 3 rpoN RNA polymerase sigma-54 factor Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
P77998 2.59e-122 368 43 9 490 3 rpoN RNA polymerase sigma-54 factor Xanthomonas euvesicatoria
Q03408 2.01e-100 313 39 13 503 3 rpoN RNA polymerase sigma-54 factor Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15)
P30332 1.29e-95 300 37 9 481 2 rpoN1 RNA polymerase sigma-54 factor 1 Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
P22881 2.79e-92 292 35 11 518 3 rpoN RNA polymerase sigma-54 factor Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P30333 7.21e-92 292 36 12 518 2 rpoN2 RNA polymerase sigma-54 factor 2 Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
P49989 2.97e-89 285 37 14 521 3 rpoN RNA polymerase sigma-54 factor Rhizobium etli
P17263 4.09e-89 284 36 12 519 3 rpoN RNA polymerase sigma-54 factor Rhizobium meliloti (strain 1021)
P33985 6.41e-88 281 35 11 510 3 rpoN RNA polymerase sigma-54 factor Rhizobium meliloti
P33984 1.57e-84 272 38 13 509 3 rpoN RNA polymerase sigma-54 factor Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / LMG 6465 / NBRC 14845 / NCIMB 13405 / ORS 571)
P24219 3.59e-70 233 31 9 480 1 sigL RNA polymerase sigma-54 factor Bacillus subtilis (strain 168)
P38944 4.53e-70 233 30 8 482 3 rpoN Putative RNA polymerase sigma-54 factor Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680)
Q01194 3.24e-56 196 31 10 469 3 rpoN RNA polymerase sigma-54 factor Cereibacter sphaeroides
D5ANH9 9.67e-51 181 33 6 343 3 rpoN RNA polymerase sigma-54 factor Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
P0CY59 6.58e-45 165 31 4 339 3 rpoN RNA polymerase sigma-54 factor Rhodobacter capsulatus
Q9ZLC8 2.51e-36 142 30 12 346 3 rpoN RNA polymerase sigma-54 factor Helicobacter pylori (strain J99 / ATCC 700824)
P56143 7.73e-36 140 30 12 346 3 rpoN RNA polymerase sigma-54 factor Helicobacter pylori (strain ATCC 700392 / 26695)
O83149 1.61e-31 129 28 10 372 3 rpoN RNA polymerase sigma-54 factor Treponema pallidum (strain Nichols)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_03250
Feature type CDS
Gene rpoN
Product RNA polymerase factor sigma-54
Location 50651 - 52087 (strand: 1)
Length 1437 (nucleotides) / 478 (amino acids)

Contig

Accession contig_3
Length 210665 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_735
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00309 Sigma-54 factor, Activator interacting domain (AID)
PF04552 Sigma-54, DNA binding domain
PF04963 Sigma-54 factor, core binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1508 Transcription (K) K DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03092 RNA polymerase sigma-54 factor Two-component system
Flagellar assembly
Biofilm formation - Vibrio cholerae		 -

Protein Sequence

MKQSLQLKLSQQLAMTPQLQQAIRLLQLSTLELQQEIREALESNPLLELDDNHQEIDTPAESEPQKELDSAEALEQTAMPDDLPLDAQWEEIYTAGTPSGTGNDYGDDELPLYQGETTETLQDYLIWQARLTPFTETDAAIAFSIIDAIDETGYLTVSVDDIRLSIGDDEVTTEDVEAVLKRIQRFDPVGVGARDLRECLMVQLKILPPETPSLKEALAIVDQHLALLGNRDFRTLGRVTKLKEEALKSAIDLIQSLEPRPGLVVNTGESEYVIPDVLVKKHGERWVVELNSDSIPRLRVNNHYAAMGSRARSESDSQFIRNNLQEAKWLIKSLESRNDTLLRVATCIVEEQQAFFEQGEEYMKPMVLADIALRVEMHESTISRVTTQKFLHSPRGIFELKYFFSSHVSTDSGGEASSTAIRALVKKLVAAENPAKPLSDSKLTDMLAEQGIQVARRTVAKYRESLSIPPSNQRKQLI

Flanking regions ( +/- flanking 50bp)

ATTTAGGCGAAGGTTTCCGCCTGTAATGCCGTAAGGAGCCCGTGTCCGTAATGAAGCAGAGTCTGCAGCTTAAACTCAGCCAGCAACTGGCGATGACGCCACAACTTCAGCAGGCTATCCGTTTGTTGCAGCTTTCCACGCTTGAACTCCAGCAGGAGATCCGCGAGGCGCTGGAATCTAACCCGTTGCTGGAACTTGATGATAACCATCAGGAAATTGACACGCCGGCTGAATCTGAACCACAGAAAGAGCTGGACAGCGCCGAGGCTCTCGAACAGACCGCCATGCCGGATGATCTGCCGCTGGATGCACAGTGGGAAGAAATCTACACCGCCGGTACACCGTCCGGCACCGGCAATGATTACGGCGACGATGAACTGCCGCTCTATCAGGGTGAAACCACCGAAACCTTACAGGATTATCTGATCTGGCAGGCCCGCCTGACCCCCTTTACCGAAACCGATGCCGCAATTGCCTTCTCAATCATCGATGCGATTGATGAAACCGGCTATCTGACCGTTTCTGTCGATGATATCCGCCTGAGTATCGGTGACGATGAAGTCACCACCGAAGATGTGGAAGCCGTACTCAAGCGCATCCAGCGTTTTGATCCGGTGGGTGTGGGCGCCCGCGACCTGCGGGAGTGTCTGATGGTGCAGCTGAAAATTCTGCCGCCGGAAACCCCGAGCCTGAAAGAAGCCCTTGCTATCGTTGATCAGCATCTGGCATTGTTGGGGAACCGGGATTTCCGGACCCTGGGCCGGGTGACCAAACTGAAAGAAGAGGCGCTGAAATCCGCTATTGATCTGATCCAGTCGCTGGAACCGCGTCCGGGCCTGGTAGTCAACACCGGAGAATCAGAGTATGTTATTCCTGACGTCCTCGTGAAAAAACACGGCGAACGCTGGGTAGTGGAACTCAATTCCGACAGCATTCCCCGTCTGCGGGTCAATAATCACTATGCCGCAATGGGTTCGCGGGCCCGCAGTGAGAGTGACAGTCAGTTTATCCGCAACAATTTGCAGGAAGCAAAGTGGCTCATTAAAAGTCTGGAAAGCCGGAACGATACTCTGCTCAGAGTCGCGACCTGTATTGTGGAAGAGCAGCAGGCGTTCTTTGAACAGGGCGAAGAATATATGAAGCCCATGGTGCTGGCAGATATCGCACTGCGGGTTGAGATGCATGAATCAACCATTTCCCGGGTGACAACACAGAAATTTCTGCACAGTCCGCGGGGGATCTTTGAACTGAAGTACTTTTTCTCCAGCCACGTCAGTACTGACAGCGGGGGCGAGGCGTCCTCCACAGCTATCCGTGCACTGGTGAAAAAACTGGTTGCCGCCGAGAATCCGGCGAAACCGCTCAGCGACAGCAAACTGACCGATATGCTTGCCGAACAGGGCATTCAGGTCGCCAGACGTACTGTCGCGAAATATCGTGAGTCGTTATCCATCCCGCCCTCAAATCAGCGTAAACAGCTGATTTGATACACATTGAGAAGGAAGACACTATGGAATTACAAATTACCGGCCACAAC