Orthogroup:group_735


Homologs in group_735

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_03250 FBDBKF_03250 Morganella morganii S1 rpoN RNA polymerase factor sigma-54
EHELCC_07285 EHELCC_07285 Morganella morganii S2 rpoN RNA polymerase factor sigma-54
NLDBIP_07610 NLDBIP_07610 Morganella morganii S4 rpoN RNA polymerase factor sigma-54
LHKJJB_07145 LHKJJB_07145 Morganella morganii S3 rpoN RNA polymerase factor sigma-54
HKOGLL_03785 HKOGLL_03785 Morganella morganii S5 rpoN RNA polymerase factor sigma-54
F4V73_RS11670 F4V73_RS11670 Morganella psychrotolerans rpoN RNA polymerase factor sigma-54
PMI_RS18150 PMI_RS18150 Proteus mirabilis HI4320 rpoN RNA polymerase factor sigma-54

Distribution of group_735 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_735 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_735

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_735.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rpoN 7

Product

# Product Occurence
1 RNA polymerase factor sigma-54 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1508 7 K Transcription (K) DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03092 7 RNA polymerase sigma-54 factor Two-component system
Flagellar assembly
Biofilm formation - Vibrio cholerae		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00309 7 Sigma-54 factor, Activator interacting domain (AID)
PF04552 7 Sigma-54, DNA binding domain
PF04963 7 Sigma-54 factor, core binding domain

Annotations of the 30 SwissProt hits

Annotation Number of occurrences
Putative RNA polymerase sigma-54 factor 1
RNA polymerase sigma-54 factor 27
RNA polymerase sigma-54 factor 1 1
RNA polymerase sigma-54 factor 2 1

Protein length

Min length 478
Max length 491
Mean length (sd) 479.9 (4.9)
Median length 478.0

Protein length distribution