Homologs in group_73

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12 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08980 FBDBKF_08980 82.1 Morganella morganii S1 fimC P pilus assembly protein, chaperone PapD
FBDBKF_09030 FBDBKF_09030 57.7 Morganella morganii S1 fimC P pilus assembly protein, chaperone PapD
EHELCC_10380 EHELCC_10380 57.7 Morganella morganii S2 fimC P pilus assembly protein, chaperone PapD
EHELCC_10430 EHELCC_10430 82.1 Morganella morganii S2 fimC P pilus assembly protein, chaperone PapD
NLDBIP_10725 NLDBIP_10725 57.7 Morganella morganii S4 fimC P pilus assembly protein, chaperone PapD
NLDBIP_10775 NLDBIP_10775 82.1 Morganella morganii S4 fimC P pilus assembly protein, chaperone PapD
LHKJJB_10580 LHKJJB_10580 82.1 Morganella morganii S3 fimC P pilus assembly protein, chaperone PapD
LHKJJB_10630 LHKJJB_10630 57.7 Morganella morganii S3 fimC P pilus assembly protein, chaperone PapD
HKOGLL_13640 HKOGLL_13640 82.1 Morganella morganii S5 fimC P pilus assembly protein, chaperone PapD
HKOGLL_13690 HKOGLL_13690 57.7 Morganella morganii S5 fimC P pilus assembly protein, chaperone PapD
F4V73_RS10940 F4V73_RS10940 55.9 Morganella psychrotolerans - fimbria/pilus periplasmic chaperone
PMI_RS01290 PMI_RS01290 55.2 Proteus mirabilis HI4320 mrpD MR/P fimbria assembly chaperone MrpD

Distribution of the homologs in the orthogroup group_73

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_73

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P77599 1.23e-78 240 53 1 215 2 yfcS Probable fimbrial chaperone YfcS Escherichia coli (strain K12)
P15319 7.42e-71 220 48 3 223 1 papD Chaperone protein PapD Escherichia coli
P53520 1.69e-70 219 45 3 231 3 pmfD Chaperone protein PmfD Proteus mirabilis (strain HI4320)
P75749 3.09e-49 165 40 7 242 3 ybgP Uncharacterized fimbrial chaperone YbgP Escherichia coli (strain K12)
P77616 9.03e-47 159 36 5 234 3 yqiH Uncharacterized fimbrial chaperone YqiH Escherichia coli (strain K12)
P21646 1.49e-30 116 33 7 227 3 mrkB Chaperone protein MrkB Klebsiella pneumoniae
Q8X5K6 1.72e-28 111 32 7 227 2 lpfB Probable fimbrial chaperone LpfB Escherichia coli O157:H7
P31697 1.86e-28 111 34 11 228 1 fimC Chaperone protein FimC Escherichia coli (strain K12)
P42914 2.01e-28 110 33 9 230 2 yraI Probable fimbrial chaperone YraI Escherichia coli (strain K12)
P33128 3.62e-28 110 33 9 239 1 yadV Probable fimbrial chaperone YadV Escherichia coli (strain K12)
P42183 3.19e-27 104 44 2 120 3 prsD Chaperone protein PrsD (Fragment) Escherichia coli
P59590 1.3e-26 106 34 10 228 3 fimC Chaperone protein FimC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P62609 4.77e-26 104 32 6 210 1 focC Chaperone protein FocC Escherichia coli
P62610 4.77e-26 104 32 6 210 3 focC Chaperone protein FocC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P43661 7.25e-26 104 32 8 226 3 lpfB Chaperone protein LpfB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P33409 1.19e-24 101 32 10 232 3 fimB Chaperone protein FimB/FhaD Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P75856 2.39e-24 100 31 6 226 2 elfD Probable fimbrial chaperone protein ElfD Escherichia coli (strain K12)
Q8X5E4 2.09e-23 97 30 6 227 2 elfD Probable fimbrial chaperone protein ElfD Escherichia coli O157:H7
P45991 1.09e-22 96 30 7 226 3 hifB Chaperone protein HifB Haemophilus influenzae
P35757 3.48e-22 94 31 9 233 3 hifB Chaperone protein HifB Haemophilus influenzae
P33342 2.24e-21 92 31 9 226 2 yehC Probable fimbrial chaperone YehC Escherichia coli (strain K12)
P25401 2.6e-20 90 31 5 180 1 faeE Chaperone protein FaeE Escherichia coli
P37923 8.68e-20 88 33 7 208 3 fimC Chaperone protein FimC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q05433 1.83e-19 87 30 5 180 3 clpE Chaperone protein ClpE Escherichia coli
P25402 1.34e-17 82 31 8 207 3 fanE Chaperone protein FanE Escherichia coli
P77249 6.72e-17 80 32 6 177 2 sfmC Probable fimbrial chaperone SfmC Escherichia coli (strain K12)
P33387 1.65e-10 62 27 5 170 3 sefB Chaperone protein SefB Salmonella enteritidis
P33407 5.39e-10 61 27 10 216 3 myfB Chaperone protein MyfB Yersinia enterocolitica
P69966 2.1e-09 60 27 7 170 3 psaB Chaperone protein PsaB Yersinia pseudotuberculosis serotype I (strain IP32953)
P69965 2.1e-09 60 27 7 170 3 psaB Chaperone protein PsaB Yersinia pestis
P26926 7.1e-09 58 26 10 228 1 caf1M Chaperone protein caf1M Yersinia pestis
P53516 8.98e-09 57 26 8 193 3 afaB Chaperone protein AfaB Escherichia coli
P53519 1.3e-08 57 25 11 243 3 cssC Chaperone protein CssC Escherichia coli
P53518 3.47e-08 56 25 11 243 3 cssC Chaperone protein CssC Escherichia coli
P15483 7.86e-08 55 29 7 171 3 None Chaperone protein CS3-1 Escherichia coli
P40876 2.35e-07 53 27 4 133 2 ycbF Uncharacterized fimbrial chaperone YcbF Escherichia coli (strain K12)
P28722 0.000457 43 23 5 175 3 yhcA Uncharacterized fimbrial chaperone YhcA Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10985
Feature type CDS
Gene -
Product fimbria/pilus periplasmic chaperone
Location 338840 - 339598 (strand: 1)
Length 759 (nucleotides) / 252 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_73
Orthogroup size 13
N. genomes 7

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Genomic region

Domains

PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain
PF02753 Pili assembly chaperone PapD, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3121 Extracellular structures (W) W P pilus assembly protein, chaperone PapD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12519 chaperone protein PapD - -

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG042634 MrfD VF1232 Adherence

Protein Sequence

MKNKSGNFISRYLPALMLTGVLAAPTGYAAIALDRTRIILNGGERAESVEISNQNKEFPYLAQAWIEDAQGNKIKDPLLALPPIQRVEAGEKSQVKIQPMTAMNLLAQDRESLYYFNLREIPPKTDKPNTLQIALQTRIKLFYRPVALAVEQNAKPWQESITLTRQNDKYTVNNPTPYYVTISSASAVFKGKDVSGFSAVMIAPKSSETLGGSASALGSSPVLGYINDYGGRPKLVFACQANSCLVKDVKPG

Flanking regions ( +/- flanking 50bp)

ACTGCGCTGGCTGACAACCTCTGACGCGGAGAATACAAGAGAGAGTAAAAATGAAGAATAAATCAGGTAATTTTATATCACGCTATCTTCCGGCACTGATGCTGACAGGTGTATTAGCGGCACCAACGGGATACGCAGCGATAGCACTGGACAGAACCCGCATTATTTTAAACGGTGGTGAACGTGCTGAAAGTGTTGAAATATCTAACCAAAACAAAGAGTTTCCATATCTTGCGCAGGCATGGATTGAAGATGCTCAGGGCAATAAAATCAAAGATCCGCTTCTGGCGTTACCACCGATTCAGCGGGTGGAAGCCGGTGAAAAAAGTCAGGTTAAAATTCAGCCGATGACAGCGATGAACCTGCTGGCACAGGACAGAGAGAGTTTGTACTACTTCAATTTACGGGAAATCCCACCGAAAACGGATAAACCAAATACCCTGCAAATTGCATTACAGACCCGAATCAAACTGTTCTATCGTCCGGTTGCCTTAGCCGTTGAGCAGAATGCTAAACCGTGGCAGGAGAGCATCACACTGACGCGTCAGAATGATAAATACACCGTGAATAATCCCACTCCTTACTATGTCACGATTTCATCGGCATCAGCGGTATTTAAAGGGAAAGATGTCAGCGGGTTCAGTGCTGTCATGATCGCACCGAAAAGCAGTGAAACACTTGGTGGCAGTGCATCAGCGCTGGGAAGTTCCCCGGTACTGGGTTACATCAATGACTACGGTGGTCGTCCTAAATTAGTTTTTGCCTGTCAGGCCAATAGCTGCCTGGTAAAAGATGTTAAACCGGGCTGATGTGAAATCGCAGATCAGGAGCAAAAAAATGAAAATATTCATTAAACATG