Homologs in group_319

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09375 FBDBKF_09375 64.2 Morganella morganii S1 sctJ type III secretion inner membrane ring lipoprotein SctJ
EHELCC_10035 EHELCC_10035 64.2 Morganella morganii S2 sctJ type III secretion inner membrane ring lipoprotein SctJ
NLDBIP_10380 NLDBIP_10380 64.2 Morganella morganii S4 sctJ type III secretion inner membrane ring lipoprotein SctJ
LHKJJB_10975 LHKJJB_10975 64.2 Morganella morganii S3 sctJ type III secretion inner membrane ring lipoprotein SctJ
HKOGLL_14035 HKOGLL_14035 64.2 Morganella morganii S5 sctJ type III secretion inner membrane ring lipoprotein SctJ
F4V73_RS08395 F4V73_RS08395 28.3 Morganella psychrotolerans sctJ type III secretion inner membrane ring lipoprotein SctJ
PMI_RS13310 PMI_RS13310 39.3 Proteus mirabilis HI4320 sctJ type III secretion inner membrane ring lipoprotein SctJ

Distribution of the homologs in the orthogroup group_319

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_319

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P41786 7.67e-40 140 36 6 243 1 prgK Lipoprotein PrgK Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q06081 7.39e-35 127 42 1 164 1 mxiJ Lipoprotein MxiJ Shigella flexneri
Q55288 8.49e-35 127 42 1 164 3 mxiJ Lipoprotein MxiJ Shigella sonnei
P80152 1.1e-17 82 29 1 165 3 hrpB3 Protein hrpB3 Xanthomonas euvesicatoria
Q01251 2.41e-17 81 33 3 184 2 yscJ Yop proteins translocation lipoprotein J Yersinia enterocolitica
P69973 2.56e-17 81 33 3 184 2 yscJ Yop proteins translocation lipoprotein J Yersinia pseudotuberculosis serotype I (strain IP32953)
P69972 2.56e-17 81 33 3 184 1 yscJ Yop proteins translocation lipoprotein J Yersinia pestis
P55714 4.39e-15 76 27 1 172 3 nolT Nodulation protein NolT Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P33209 4.81e-15 76 27 1 172 2 nolT Nodulation protein NolT Rhizobium fredii
P74852 1.52e-12 68 28 4 178 2 ssaJ Secretion system apparatus lipoprotein SsaJ Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
D0ZWT5 1.52e-12 68 28 4 178 3 ssaJ Secretion system apparatus lipoprotein SsaJ Salmonella typhimurium (strain 14028s / SGSC 2262)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10590
Feature type CDS
Gene sctJ
Product type III secretion inner membrane ring lipoprotein SctJ
Location 248940 - 249680 (strand: -1)
Length 741 (nucleotides) / 246 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_319
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF01514 Secretory protein of YscJ/FliF family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4669 Intracellular trafficking, secretion, and vesicular transport (U) U Type III secretory pathway, lipoprotein EscJ

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K22505 type III secretion system inner membrane ring protein - -

Protein Sequence

MRRLLIVLLISGLSTLMLTGCNEGPLLSSLNQRQSNEVLAALHKHHIQAVKIPQGKGLFSVTVPEEQSRYAIRVLQEYQLPSNERVEIAGAFPADSLIASPQSEKARLISAIEQRLEQSINSFTEVAETRVHLSYPMAEPRKKHAEPPRASVLIYHTGIEDEDGFTRNIQTFVMNAFSGLDEEHISVILHYKPLVISPPSEQERVPFSPLGLLLSLAGLLLTGGIFYLQRSRIRTFLINLREKRNG

Flanking regions ( +/- flanking 50bp)

ATCACACACCTGGGTATCAGTGCGGTAGATTCCGTGGTTAAGGGTCAGTAATGCGTCGCTTACTTATTGTTCTGCTGATATCCGGACTCAGTACACTGATGCTCACCGGCTGCAATGAGGGACCACTGCTCTCTTCCCTCAATCAGCGTCAGTCCAATGAAGTTCTGGCCGCATTACATAAACATCATATTCAGGCAGTCAAAATTCCCCAGGGAAAGGGGTTATTTTCTGTCACCGTACCGGAAGAACAGAGCCGCTACGCCATCCGGGTATTGCAGGAATATCAGTTACCCAGCAATGAACGGGTTGAGATAGCGGGCGCGTTTCCTGCCGATTCACTGATAGCCTCACCACAGTCCGAAAAAGCACGGCTGATCTCGGCTATCGAACAGCGCCTGGAACAGTCTATTAACTCCTTTACTGAAGTAGCAGAAACCCGGGTGCATCTCAGCTACCCAATGGCGGAACCACGTAAAAAACACGCGGAACCACCACGGGCTTCTGTTTTGATCTATCACACCGGCATTGAAGATGAAGATGGCTTCACCCGCAATATTCAGACTTTTGTGATGAATGCATTCAGTGGTCTGGATGAAGAGCATATTTCAGTTATTTTGCACTACAAACCACTGGTTATTTCACCGCCTTCTGAACAGGAACGTGTACCGTTCTCCCCTTTGGGCCTGTTACTGTCTCTGGCGGGTTTATTGCTGACAGGCGGAATATTTTATCTGCAGCGTTCCCGCATCCGGACATTTTTAATAAACCTGCGGGAAAAGCGTAATGGATAACCAACCGGATATACAGGCAGCCATTACCCGCGTGATGTATCAGCCATCCG