COG4669


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4669, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Type III secretory pathway, lipoprotein EscJ
Function(s) descr. Intracellular trafficking, secretion, and vesicular transport (U)

Occurence in the database

COG4669 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_319 FBDBKF_09375 105467 106204 1 sctJ type III secretion inner membrane ring lipoprotein SctJ Morganella morganii S1
1 group_319 EHELCC_10035 39900 40637 -1 sctJ type III secretion inner membrane ring lipoprotein SctJ Morganella morganii S2
2 group_319 NLDBIP_10380 18171 18908 -1 sctJ type III secretion inner membrane ring lipoprotein SctJ Morganella morganii S4
3 group_319 LHKJJB_10975 172620 173357 1 sctJ type III secretion inner membrane ring lipoprotein SctJ Morganella morganii S3
4 group_319 HKOGLL_14035 105921 106658 1 sctJ type III secretion inner membrane ring lipoprotein SctJ Morganella morganii S5
5 group_319 F4V73_RS08395 1736419 1737198 1 sctJ type III secretion inner membrane ring lipoprotein SctJ Morganella psychrotolerans
6 group_319 F4V73_RS10590 248940 249680 -1 sctJ type III secretion inner membrane ring lipoprotein SctJ Morganella psychrotolerans
7 group_319 PMI_RS13310 2952425 2953177 1 sctJ type III secretion inner membrane ring lipoprotein SctJ Proteus mirabilis HI4320