Homologs in group_319

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09375 FBDBKF_09375 100.0 Morganella morganii S1 sctJ type III secretion inner membrane ring lipoprotein SctJ
EHELCC_10035 EHELCC_10035 100.0 Morganella morganii S2 sctJ type III secretion inner membrane ring lipoprotein SctJ
NLDBIP_10380 NLDBIP_10380 100.0 Morganella morganii S4 sctJ type III secretion inner membrane ring lipoprotein SctJ
HKOGLL_14035 HKOGLL_14035 100.0 Morganella morganii S5 sctJ type III secretion inner membrane ring lipoprotein SctJ
F4V73_RS08395 F4V73_RS08395 29.5 Morganella psychrotolerans sctJ type III secretion inner membrane ring lipoprotein SctJ
F4V73_RS10590 F4V73_RS10590 64.2 Morganella psychrotolerans sctJ type III secretion inner membrane ring lipoprotein SctJ
PMI_RS13310 PMI_RS13310 44.9 Proteus mirabilis HI4320 sctJ type III secretion inner membrane ring lipoprotein SctJ

Distribution of the homologs in the orthogroup group_319

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_319

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P41786 2.2e-41 145 39 3 200 1 prgK Lipoprotein PrgK Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q06081 2.85e-36 131 40 2 179 1 mxiJ Lipoprotein MxiJ Shigella flexneri
Q55288 2.97e-36 131 40 2 179 3 mxiJ Lipoprotein MxiJ Shigella sonnei
P80152 7.53e-20 88 30 3 186 3 hrpB3 Protein hrpB3 Xanthomonas euvesicatoria
Q01251 9.11e-20 88 34 2 182 2 yscJ Yop proteins translocation lipoprotein J Yersinia enterocolitica
P69973 1.02e-19 88 34 2 182 2 yscJ Yop proteins translocation lipoprotein J Yersinia pseudotuberculosis serotype I (strain IP32953)
P69972 1.02e-19 88 34 2 182 1 yscJ Yop proteins translocation lipoprotein J Yersinia pestis
P55714 2.04e-15 77 31 2 176 3 nolT Nodulation protein NolT Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P33209 2.49e-15 77 30 2 176 2 nolT Nodulation protein NolT Rhizobium fredii
P74852 2.62e-13 70 25 5 202 2 ssaJ Secretion system apparatus lipoprotein SsaJ Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
D0ZWT5 2.62e-13 70 25 5 202 3 ssaJ Secretion system apparatus lipoprotein SsaJ Salmonella typhimurium (strain 14028s / SGSC 2262)

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_10975
Feature type CDS
Gene sctJ
Product type III secretion inner membrane ring lipoprotein SctJ
Location 172620 - 173357 (strand: 1)
Length 738 (nucleotides) / 245 (amino acids)

Contig

Accession ZDB_367
Length 191445 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_319
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF01514 Secretory protein of YscJ/FliF family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4669 Intracellular trafficking, secretion, and vesicular transport (U) U Type III secretory pathway, lipoprotein EscJ

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K22505 type III secretion system inner membrane ring protein - -

Protein Sequence

MHKIIFILIISGISLLLGGCKEGTILSSLNQRQSNEVLAALHKHQIQAVKVPQGKGLFTISVPEEQSRQAIHILQEYHLPSNERIEIAGIFPSDSLIASPQSEKARLISAIEQRLEQSLLSFDAVTGARVHLSYPLSGPGNSRKKPEIPRASVLIYHSGIEDETQFTRDIQTFVMNAFNGLTEETVSVLLYPGKPVIDLPPQPEAAGLSPLFLLFPAGIMLAAAGYFCRAQLRAFLMRRKVKQHE

Flanking regions ( +/- flanking 50bp)

ATGCTGCATCTGACCCTGAATGCTGCAGATACCGTAATTAAAGGTCAGTAATGCACAAGATAATATTTATATTAATAATAAGCGGAATAAGTCTGCTGCTCGGCGGCTGTAAAGAAGGTACGATTCTGTCGTCGCTGAATCAGCGTCAGTCGAATGAAGTGCTGGCTGCACTGCATAAACACCAGATTCAGGCAGTAAAAGTCCCGCAGGGAAAAGGGCTGTTTACCATTTCAGTACCGGAAGAGCAGAGCCGTCAGGCCATTCATATTTTGCAGGAATATCACCTGCCCAGTAATGAGCGGATTGAGATTGCCGGGATCTTTCCGTCAGATTCACTGATTGCCTCTCCGCAGTCAGAAAAAGCCCGCCTGATTTCGGCCATTGAACAACGGCTGGAGCAATCGCTGCTCTCATTTGATGCGGTTACCGGAGCCCGTGTTCACCTCAGTTATCCGCTGTCCGGCCCGGGAAACTCCCGGAAAAAACCGGAAATACCCCGCGCCTCTGTGCTGATCTACCATTCCGGTATTGAAGATGAAACACAATTCACCCGGGATATTCAGACATTTGTGATGAATGCCTTTAACGGGCTGACCGAAGAAACCGTTTCTGTCCTTCTGTATCCCGGGAAACCGGTTATTGATCTGCCGCCTCAGCCGGAAGCAGCCGGACTGTCCCCGCTTTTTCTGCTGTTTCCGGCAGGAATAATGCTGGCAGCGGCCGGTTATTTCTGCCGTGCACAATTACGGGCATTTCTGATGCGGCGGAAGGTAAAACAGCATGAATGACCGGTTTGATATACAGGGCGCGGTCACGCGGGTGATGTACCAGCCGGCGG