Homologs in group_289

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09375 FBDBKF_09375 29.5 Morganella morganii S1 sctJ type III secretion inner membrane ring lipoprotein SctJ
EHELCC_10035 EHELCC_10035 29.5 Morganella morganii S2 sctJ type III secretion inner membrane ring lipoprotein SctJ
NLDBIP_10380 NLDBIP_10380 29.5 Morganella morganii S4 sctJ type III secretion inner membrane ring lipoprotein SctJ
LHKJJB_10975 LHKJJB_10975 29.5 Morganella morganii S3 sctJ type III secretion inner membrane ring lipoprotein SctJ
HKOGLL_14035 HKOGLL_14035 29.5 Morganella morganii S5 sctJ type III secretion inner membrane ring lipoprotein SctJ
F4V73_RS10590 F4V73_RS10590 28.3 Morganella psychrotolerans sctJ type III secretion inner membrane ring lipoprotein SctJ
PMI_RS13310 PMI_RS13310 25.7 Proteus mirabilis HI4320 sctJ type III secretion inner membrane ring lipoprotein SctJ

Distribution of the homologs in the orthogroup group_289

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_289

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q01251 5.64e-53 175 41 2 237 2 yscJ Yop proteins translocation lipoprotein J Yersinia enterocolitica
P69973 1.19e-52 174 43 2 208 2 yscJ Yop proteins translocation lipoprotein J Yersinia pseudotuberculosis serotype I (strain IP32953)
P69972 1.19e-52 174 43 2 208 1 yscJ Yop proteins translocation lipoprotein J Yersinia pestis
P74852 2.09e-42 147 36 3 220 2 ssaJ Secretion system apparatus lipoprotein SsaJ Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
D0ZWT5 2.09e-42 147 36 3 220 3 ssaJ Secretion system apparatus lipoprotein SsaJ Salmonella typhimurium (strain 14028s / SGSC 2262)
P33209 3.68e-33 125 37 2 177 2 nolT Nodulation protein NolT Rhizobium fredii
P55714 3.83e-33 125 37 2 177 3 nolT Nodulation protein NolT Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P80152 5.15e-29 113 38 4 192 3 hrpB3 Protein hrpB3 Xanthomonas euvesicatoria
Q55288 1.61e-15 77 31 2 171 3 mxiJ Lipoprotein MxiJ Shigella sonnei
Q06081 1.76e-15 76 31 2 171 1 mxiJ Lipoprotein MxiJ Shigella flexneri
P41786 3.36e-13 70 28 7 231 1 prgK Lipoprotein PrgK Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS08395
Feature type CDS
Gene sctJ
Product type III secretion inner membrane ring lipoprotein SctJ
Location 1736419 - 1737198 (strand: 1)
Length 780 (nucleotides) / 259 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000001
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_289
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF01514 Secretory protein of YscJ/FliF family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4669 Intracellular trafficking, secretion, and vesicular transport (U) U Type III secretory pathway, lipoprotein EscJ

Kegg Ortholog Annotation(s)

Protein Sequence

MQIPTPFYRPVFRCITLCFIALLLTACKTELYSGLPQKEANEMYSLLLENNIIAEKKSGKEGKASLLVEESHIPKAIEILRQRGYPRGQFQSLNDIFTGDSLIPSPQEQAAKLNYVRSQELAQVLSDIDGVITARVLFTRPEFKADSDTPPEHSVSAAIFIKYSPDIPVFRYRDQIKHLVKNSIQGLTAENISLTLIPAITAKPVITTPELRTLMNIQVTTGSYTKLLSYAAGFIILFISSHLLHFFLNKRKPRHERPD

Flanking regions ( +/- flanking 50bp)

AGTCGGGAAGGTGAGTCAGAATATCGATATGATGATAAAAAGCCAGTAATATGCAGATCCCTACTCCTTTTTATCGCCCTGTATTCCGCTGTATAACGCTTTGTTTTATTGCATTGTTACTCACTGCCTGTAAAACAGAATTATATAGCGGATTACCACAAAAAGAAGCGAATGAAATGTATTCCCTGCTGCTGGAAAATAATATTATTGCAGAGAAAAAATCCGGTAAAGAGGGAAAGGCTTCTTTATTAGTTGAAGAGTCACACATTCCGAAGGCTATCGAGATATTAAGACAACGTGGTTATCCACGAGGACAGTTCCAGTCCCTCAATGACATTTTTACCGGTGACAGTTTAATTCCCAGCCCGCAGGAACAGGCTGCAAAACTTAATTATGTCAGATCACAGGAGCTGGCGCAGGTATTATCTGATATTGATGGTGTCATCACTGCCAGAGTTTTATTTACCCGACCTGAATTTAAAGCAGATTCAGACACGCCTCCTGAGCATTCAGTCAGCGCTGCCATTTTTATCAAATATTCCCCTGATATTCCTGTATTCCGTTACCGGGATCAAATTAAGCACCTGGTTAAAAACAGCATTCAGGGACTCACAGCAGAAAATATCAGTCTGACACTCATACCCGCTATCACAGCAAAACCGGTTATTACCACACCTGAATTACGAACACTTATGAATATACAAGTGACAACGGGTTCTTACACTAAGCTACTCAGTTATGCCGCCGGGTTTATTATCCTGTTTATTTCCTCACACCTGCTGCATTTTTTTCTGAACAAACGAAAACCCCGTCATGAACGCCCTGACTGATTTTCAGTTTCGTTTTTGCCCGGCCATTTATTGCCATTCGGATCATCTGA