Homologs in group_77

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12 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_20045 FBDBKF_20045 21.1 Morganella morganii S1 sfmF fimbria assembly protein
EHELCC_03485 EHELCC_03485 21.1 Morganella morganii S2 sfmF fimbria assembly protein
NLDBIP_03485 NLDBIP_03485 21.1 Morganella morganii S4 sfmF fimbria assembly protein
LHKJJB_09315 LHKJJB_09315 21.1 Morganella morganii S3 sfmF fimbria assembly protein
HKOGLL_09660 HKOGLL_09660 21.1 Morganella morganii S5 sfmF fimbria assembly protein
F4V73_RS00870 F4V73_RS00870 25.5 Morganella psychrotolerans - fimbrial protein
F4V73_RS01055 F4V73_RS01055 18.9 Morganella psychrotolerans - fimbrial protein
F4V73_RS01060 F4V73_RS01060 21.7 Morganella psychrotolerans - fimbrial protein
F4V73_RS01665 F4V73_RS01665 21.7 Morganella psychrotolerans sfmF fimbria assembly protein
F4V73_RS09385 F4V73_RS09385 27.5 Morganella psychrotolerans - fimbrial protein
F4V73_RS10910 F4V73_RS10910 15.6 Morganella psychrotolerans - fimbrial protein
F4V73_RS12590 F4V73_RS12590 24.2 Morganella psychrotolerans - fimbrial protein

Distribution of the homologs in the orthogroup group_77

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_77

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
B2FNJ0 4.39e-08 53 38 2 94 1 smf-1 Major fimbrial subunit SMF-1 Stenotrophomonas maltophilia (strain K279a)
P11312 5.26e-06 48 26 5 160 3 F17a-A F17 fimbrial protein Escherichia coli
P05788 2.59e-05 46 30 6 160 3 fim2 Serotype 2 fimbrial subunit Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P09808 7e-05 45 36 0 76 3 fimX Fimbrial protein FimX Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P45993 7.01e-05 45 33 2 99 3 hifD Minor fimbrial subunit HifD Haemophilus influenzae
P35076 0.000865 41 25 5 147 3 fimA Protein FimA Bordetella pertussis

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09370
Feature type CDS
Gene -
Product fimbrial protein
Location 1971743 - 1972342 (strand: -1)
Length 600 (nucleotides) / 199 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_77
Orthogroup size 13
N. genomes 6

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Genomic region

Domains

PF00419 Fimbrial protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3539 Cell motility (N) N Pilin (type 1 fimbrial protein)

Protein Sequence

MYLNIVKFSKVKYLSILIVLLTAVLGKFTYAANKKICDNNCQIPVEFTGTYLESTCKISVDGGSKDGIVNLPKISVLNLKETGKEAGKTRFSIALDNCPADSVIELILRNSGGNADANTGNLKTEDDNLSAKKVQLRIRKEEDNDQMVIDNEQSFQKYIIPATSVKVTHYYSVSYFSEGNNVVTPGTVRSSAIIDLNYK

Flanking regions ( +/- flanking 50bp)

GCATCACAAATAGCATCTGCACAGGATGGAATTACTCAGCTGGAGGTCAAATGTATTTAAATATTGTTAAATTCAGCAAAGTAAAATATTTATCAATACTAATTGTTTTACTTACGGCGGTTTTAGGAAAATTTACATATGCCGCAAATAAAAAAATATGTGATAATAATTGTCAGATTCCGGTCGAATTCACAGGTACGTATTTAGAATCCACATGTAAAATAAGTGTGGATGGTGGTTCTAAAGACGGCATTGTTAATTTACCAAAAATATCGGTATTAAATTTAAAGGAAACGGGTAAAGAAGCGGGTAAAACCCGGTTTTCGATAGCACTGGATAATTGTCCCGCAGATTCAGTTATTGAGTTAATTCTCAGGAATTCAGGTGGTAACGCTGATGCGAATACCGGTAATCTGAAAACTGAAGATGATAATTTATCGGCCAAAAAAGTTCAGCTCCGTATTCGTAAAGAAGAGGATAATGATCAGATGGTCATTGATAATGAACAAAGTTTCCAAAAATACATTATACCGGCAACCTCTGTTAAAGTTACACATTACTACTCAGTAAGTTATTTTTCTGAAGGAAATAATGTTGTTACGCCGGGTACGGTTCGTTCTTCAGCTATAATAGATTTAAATTACAAATAATCCTAAAAGTTTGTTATGAATATATTTTGTTCATAACAAACGGATTTATC