Homologs in group_3644

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4 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS00090 F4V73_RS00090 61.6 Morganella psychrotolerans tssC type VI secretion system contractile sheath large subunit
F4V73_RS07015 F4V73_RS07015 27.1 Morganella psychrotolerans - type VI secretion system contractile sheath large subunit
F4V73_RS07020 F4V73_RS07020 39.5 Morganella psychrotolerans tssC type VI secretion system contractile sheath large subunit
F4V73_RS16865 F4V73_RS16865 41.3 Morganella psychrotolerans tssC type VI secretion system contractile sheath large subunit

Distribution of the homologs in the orthogroup group_3644

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3644

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9I748 0 776 72 1 499 1 tssC1 Type VI secretion system sheath protein TssC1 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09360
Feature type CDS
Gene tssC
Product type VI secretion system contractile sheath large subunit
Location 1969482 - 1970987 (strand: -1)
Length 1506 (nucleotides) / 501 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3644
Orthogroup size 5
N. genomes 1

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Genomic region

Domains

PF05943 EvpB/VC_A0108, tail sheath N-terminal domain
PF18945 EvpB/VC_A0108, tail sheath gpW/gp25-like domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3517 Intracellular trafficking, secretion, and vesicular transport (U) U Predicted component TssB of the type VI protein secretion system, VipA/VipB/TssB family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11900 type VI secretion system protein ImpC Biofilm formation - Pseudomonas aeruginosa -

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG041203 type VI secretion system contractile sheath large subunit VF1263 Effector delivery system

Protein Sequence

MLAQNNQKNAGAKATQTQEKSDFSSLLAQEFKSKTEQSKTAVQNAVKTLAEQALANSITISYDAYKNIESIIAEIDLKMSEQINLILHHKEFQQLESAWRGLHYLVNNTETDEKLKLRFMDISKDELRRNMKRYKGVAWDQSPLFKQVYEEEYGQLGGEPYGCLVADYFFDHTPPDVDLLGSIAKVAASAHVPFITGASPSVMQMDSWQELSNPRDLTKIFTQNLEYAAWNSLRQSEDARYIGLAMPRFLARLPYGIRTNPVEEFDFEETTDGADHSKYSWSNAAYAMAVNINRSFKQFGWCTLIRGVESGGVVENLPCHTFPSDDGGVDMKCPTEIAISDRREAELSKNGFIPLIHRKNTDYAAFIGAQSLQKPAEYYDPDATANANLSARLPYMFACSRFAHYLKCIVRDKIGSFKERDDMQKWLNDWLMNYVDGDPANSSQETKARRPLAAAEVVVEDVEGNPGYYQAKFFLRPHFQLEGLTVSLRMVAKLPSLKGAA

Flanking regions ( +/- flanking 50bp)

AAGTTGCAGATCCGTCTCAGGACGATTAAGAATTGTAGGGTGCCAGAAATATGTTAGCTCAAAATAATCAGAAAAATGCGGGCGCTAAAGCGACGCAGACTCAGGAAAAAAGTGATTTCAGCTCACTGTTAGCACAGGAGTTTAAATCAAAGACTGAACAGTCTAAAACTGCGGTACAGAACGCAGTTAAAACACTGGCTGAACAAGCATTAGCCAACTCAATCACGATTTCGTATGACGCGTATAAAAATATCGAGTCAATCATTGCCGAAATCGACCTGAAAATGTCAGAGCAGATCAATCTGATCCTGCACCATAAAGAATTCCAGCAGTTGGAAAGCGCATGGCGCGGCCTGCATTATCTGGTCAACAATACTGAAACCGACGAGAAACTGAAATTACGTTTCATGGACATCTCTAAAGATGAACTGCGTCGTAACATGAAGCGCTATAAAGGCGTTGCATGGGATCAAAGCCCGCTGTTCAAGCAGGTTTATGAAGAAGAATATGGCCAGTTAGGTGGCGAGCCGTATGGCTGCCTGGTTGCTGACTACTTCTTTGATCATACTCCGCCTGATGTTGATCTGCTGGGTTCAATCGCGAAAGTTGCTGCCTCTGCACACGTGCCGTTCATTACCGGTGCATCTCCTTCTGTCATGCAGATGGATTCATGGCAGGAACTGTCTAACCCGCGTGACCTGACTAAAATCTTTACCCAGAACCTGGAATACGCAGCATGGAACTCCCTGCGCCAGTCTGAAGATGCCCGTTATATCGGTCTGGCAATGCCACGCTTCCTGGCCCGCCTGCCATACGGCATCCGTACCAACCCGGTTGAAGAATTCGATTTCGAAGAAACCACTGATGGTGCAGATCACAGCAAATATTCATGGTCAAACGCGGCATACGCGATGGCTGTCAATATCAACCGTTCATTCAAGCAGTTCGGCTGGTGTACCCTGATCCGCGGTGTGGAAAGTGGTGGTGTTGTTGAGAACCTGCCTTGCCATACATTCCCGAGTGATGATGGCGGCGTGGACATGAAATGTCCTACAGAGATCGCAATTTCTGACCGTCGTGAAGCTGAACTGTCCAAAAACGGTTTCATTCCGTTAATTCACCGTAAAAACACAGACTATGCAGCGTTTATCGGCGCACAGTCTCTGCAAAAACCGGCTGAATATTATGATCCGGATGCAACTGCAAATGCCAACCTGTCTGCGCGTCTGCCATACATGTTTGCCTGCTCCCGCTTCGCGCATTATCTGAAATGTATCGTCCGCGACAAGATCGGTTCGTTCAAAGAGCGTGATGATATGCAGAAATGGCTGAATGACTGGCTGATGAACTACGTTGACGGGGATCCTGCTAACTCTTCTCAGGAAACGAAAGCACGCCGTCCGCTGGCTGCGGCTGAAGTGGTTGTTGAAGATGTTGAAGGTAACCCTGGTTACTACCAGGCTAAATTCTTCCTGCGTCCGCACTTCCAGCTGGAAGGTCTGACTGTATCTTTACGTATGGTTGCGAAATTACCATCACTGAAAGGTGCTGCGTAACCGCATCGGTAAGAAAAATTCTCTCGCTTCACAAAGGGAATAGCAGTTAG