Homologs in group_77

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11 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01295 FBDBKF_01295 29.7 Morganella morganii S1 tssC type VI secretion system contractile sheath large subunit
EHELCC_00250 EHELCC_00250 29.7 Morganella morganii S2 tssC type VI secretion system contractile sheath large subunit
NLDBIP_03210 NLDBIP_03210 29.7 Morganella morganii S4 tssC type VI secretion system contractile sheath large subunit
LHKJJB_04725 LHKJJB_04725 29.7 Morganella morganii S3 tssC type VI secretion system contractile sheath large subunit
HKOGLL_02320 HKOGLL_02320 29.7 Morganella morganii S5 tssC type VI secretion system contractile sheath large subunit
F4V73_RS00090 F4V73_RS00090 38.8 Morganella psychrotolerans tssC type VI secretion system contractile sheath large subunit
F4V73_RS02375 F4V73_RS02375 28.4 Morganella psychrotolerans tssC type VI secretion system contractile sheath large subunit
F4V73_RS07015 F4V73_RS07015 24.6 Morganella psychrotolerans - type VI secretion system contractile sheath large subunit
F4V73_RS09360 F4V73_RS09360 39.6 Morganella psychrotolerans tssC type VI secretion system contractile sheath large subunit
F4V73_RS16865 F4V73_RS16865 33.9 Morganella psychrotolerans tssC type VI secretion system contractile sheath large subunit
PMI_RS03680 PMI_RS03680 29.9 Proteus mirabilis HI4320 tssC type VI secretion system contractile sheath large subunit

Distribution of the homologs in the orthogroup group_77

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_77

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9I748 9.13e-119 360 38 6 497 1 tssC1 Type VI secretion system sheath protein TssC1 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07020
Feature type CDS
Gene tssC
Product type VI secretion system contractile sheath large subunit
Location 1457966 - 1459447 (strand: -1)
Length 1482 (nucleotides) / 493 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000001
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_77
Orthogroup size 12
N. genomes 7

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Genomic region

Domains

PF05943 EvpB/VC_A0108, tail sheath N-terminal domain
PF18945 EvpB/VC_A0108, tail sheath gpW/gp25-like domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3517 Intracellular trafficking, secretion, and vesicular transport (U) U Predicted component TssB of the type VI protein secretion system, VipA/VipB/TssB family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11900 type VI secretion system protein ImpC Biofilm formation - Pseudomonas aeruginosa -

Protein Sequence

MSESLQAQAAGQETVSELSFLDRALQATVQTPPDTARELMTALTRQAMEGTVSWDKNLTLTLRNAIAAIDNKISAQLSKVMMSPDFRRLEGSWLGLQKLVKNSDLGADLKIRLADFTKTELLQQFENAPAIDRSPFFNQVYQAEFGTAGGQPYGTLLGDFEFGYGEEDVALLRYMGEVACASHAPFVAAAGHTMFDFPAFTQFADGKPVAAGFDAPAYAAWNAFRASDESRYVALTLPKTLARTPYGANGTPVSGFSFEELPVREDGSARVSSQDQFVWSNAAYAYGLLLTDSYRRFGWCTAVRGAENGGKVENLPNFIYRNDARDTVQMCPSQVNLTDEREKELSDLGFLPLVHYKNANYGVFMGAQTVHKPKSYTDPAATANAAISARLPYVMASSRIAQYLKVIGRDRIGSNLSAADVEKALSRWIHQYVNPNAIGNEAKATHPLAEAKVTVSDLPGRPGMYAAVAWIRPWLQMEALSASLRMVADIPGG

Flanking regions ( +/- flanking 50bp)

GCAGGCACTTGAATTGCTCTCGTCAGAATTGGCGGTAACGGAGGGCCGCAATGAGTGAGTCACTACAGGCGCAGGCCGCCGGGCAGGAAACAGTTTCTGAGCTGAGTTTTCTGGATCGCGCGTTGCAGGCGACCGTCCAGACCCCGCCGGATACCGCGCGGGAACTGATGACCGCACTGACACGCCAGGCAATGGAAGGCACGGTGAGCTGGGATAAAAACCTGACACTCACGCTGCGCAATGCGATTGCCGCGATCGACAATAAAATTTCAGCGCAGTTATCAAAGGTGATGATGTCACCGGACTTCAGGCGGCTGGAAGGCAGTTGGCTTGGTTTGCAGAAATTAGTGAAAAACAGTGATTTGGGCGCAGATTTAAAAATCCGTCTTGCTGATTTTACCAAGACAGAACTGCTGCAACAGTTTGAAAATGCCCCGGCGATTGATCGCAGCCCATTTTTTAATCAGGTGTATCAGGCGGAATTCGGCACCGCCGGAGGACAGCCTTACGGCACACTGCTCGGGGATTTTGAATTCGGCTACGGTGAAGAAGATGTCGCCCTGCTGCGCTATATGGGCGAAGTGGCCTGTGCATCTCATGCACCGTTTGTTGCCGCCGCCGGTCACACCATGTTTGATTTTCCGGCATTTACACAGTTTGCGGACGGCAAACCGGTTGCCGCCGGTTTTGATGCCCCGGCGTATGCGGCCTGGAATGCATTCCGCGCATCTGATGAATCCCGCTATGTGGCACTGACTCTGCCGAAAACCCTGGCGCGCACACCTTATGGTGCGAACGGTACGCCGGTCAGCGGTTTCAGTTTTGAAGAACTTCCTGTGCGCGAAGATGGCTCGGCACGGGTGTCGTCACAGGATCAGTTTGTCTGGAGTAACGCGGCGTATGCTTACGGGCTGTTGCTGACAGATTCGTACCGCCGTTTCGGCTGGTGTACGGCTGTCCGTGGTGCGGAAAATGGCGGCAAAGTGGAAAATCTGCCGAATTTTATTTATCGCAATGATGCCCGCGACACGGTGCAGATGTGTCCGTCACAGGTCAATCTGACGGATGAGCGGGAAAAAGAGCTGAGCGACCTGGGTTTTCTGCCGCTGGTTCATTATAAAAATGCTAATTATGGCGTTTTTATGGGTGCGCAGACGGTTCATAAACCTAAAAGTTATACCGATCCTGCCGCCACCGCGAATGCGGCAATTTCTGCCCGCCTGCCTTATGTGATGGCGAGCAGCCGTATTGCGCAGTATCTCAAAGTAATCGGGCGTGACCGTATCGGCTCAAATCTCTCGGCGGCGGATGTGGAAAAAGCGCTGAGCCGCTGGATCCATCAATATGTGAATCCGAATGCCATCGGCAATGAAGCCAAAGCGACCCATCCGCTGGCAGAAGCCAAAGTCACCGTGAGTGATTTACCCGGACGCCCGGGCATGTACGCTGCTGTTGCGTGGATACGTCCGTGGCTACAGATGGAAGCGCTGAGTGCGTCTTTACGGATGGTGGCCGATATTCCGGGCGGCTGATTTAGTAAGAGAAATATTCAGGAAAGGAATAGTCAGGAAAAGGAAGACGG