COG3517


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3517, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 12 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Predicted component TssB of the type VI protein secretion system, VipA/VipB/TssB family
Function(s) descr. Intracellular trafficking, secretion, and vesicular transport (U)

Occurence in the database

COG3517 is associated with 12 different proteins (see tab "Protein list" and "Profile")
The 12 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_545 FBDBKF_01295 249645 251129 1 tssC type VI secretion system contractile sheath large subunit Morganella morganii S1
1 group_545 EHELCC_00250 57739 59223 -1 tssC type VI secretion system contractile sheath large subunit Morganella morganii S2
2 group_545 NLDBIP_03210 620913 622397 1 tssC type VI secretion system contractile sheath large subunit Morganella morganii S4
3 group_545 LHKJJB_04725 228154 229638 1 tssC type VI secretion system contractile sheath large subunit Morganella morganii S3
4 group_545 HKOGLL_02320 57944 59428 -1 tssC type VI secretion system contractile sheath large subunit Morganella morganii S5
5 group_3644 F4V73_RS00090 22661 24175 -1 tssC type VI secretion system contractile sheath large subunit Morganella psychrotolerans
6 group_545 F4V73_RS02375 504889 506373 -1 tssC type VI secretion system contractile sheath large subunit Morganella psychrotolerans
7 group_3644 F4V73_RS07015 1456587 1457915 -1 type VI secretion system contractile sheath large subunit Morganella psychrotolerans
8 group_3644 F4V73_RS07020 1457966 1459447 -1 tssC type VI secretion system contractile sheath large subunit Morganella psychrotolerans
9 group_3644 F4V73_RS09360 1969482 1970987 -1 tssC type VI secretion system contractile sheath large subunit Morganella psychrotolerans
10 group_3644 F4V73_RS16865 201774 203324 -1 tssC type VI secretion system contractile sheath large subunit Morganella psychrotolerans
11 group_545 PMI_RS03680 827814 829292 -1 tssC type VI secretion system contractile sheath large subunit Proteus mirabilis HI4320