Homologs in group_822

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04125 FBDBKF_04125 88.1 Morganella morganii S1 yfbR 5'-deoxynucleotidase YfbR and related HD superfamily hydrolases
EHELCC_05415 EHELCC_05415 88.1 Morganella morganii S2 yfbR 5'-deoxynucleotidase YfbR and related HD superfamily hydrolases
NLDBIP_05735 NLDBIP_05735 88.1 Morganella morganii S4 yfbR 5'-deoxynucleotidase YfbR and related HD superfamily hydrolases
LHKJJB_02615 LHKJJB_02615 88.1 Morganella morganii S3 yfbR 5'-deoxynucleotidase YfbR and related HD superfamily hydrolases
HKOGLL_06090 HKOGLL_06090 88.1 Morganella morganii S5 yfbR 5'-deoxynucleotidase YfbR and related HD superfamily hydrolases
PMI_RS09950 PMI_RS09950 61.0 Proteus mirabilis HI4320 - HD domain-containing protein

Distribution of the homologs in the orthogroup group_822

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_822

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q66L17 2.5e-09 58 26 2 157 2 hddc2 5'-deoxynucleotidase HDDC2 Xenopus laevis
Q54FK1 4.92e-09 57 28 4 170 3 hddc2 5'-deoxynucleotidase HDDC2 Dictyostelium discoideum
Q1LUI2 2.12e-07 52 27 3 133 2 hddc2 5'-deoxynucleotidase HDDC2 Danio rerio
B2VIV0 0.000402 43 29 4 143 3 ETA_12010 5'-deoxynucleotidase ETA_12010 Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99)
Q7N2I4 0.000681 42 26 6 178 3 plu3092 5'-deoxynucleotidase plu3092 Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
P87242 0.000699 42 25 4 135 3 hdd1 5'-deoxynucleotidase hdd1 Schizosaccharomyces pombe (strain 972 / ATCC 24843)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS08565
Feature type CDS
Gene -
Product HD domain-containing protein
Location 1767888 - 1768502 (strand: 1)
Length 615 (nucleotides) / 204 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_822
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13023 HD domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1896 Nucleotide transport and metabolism (F)
General function prediction only (R)		 FR 5'-deoxynucleotidase YfbR and related HD superfamily hydrolases

Protein Sequence

MSSAVSAPVTPQVIPFSQLITFVMELDKLKSIYRKTRLLNNERQENSAEHSWHFAMMAMAFAPYVQDADMLRILKMALLHDVVEIDAGDVLVFDLAAREAIAEQEVAAAHRIFGLLPQPQADEFLALWNEYDAGETRESRIANMLDRVMPVLMNLHNEGQSWVEHNISLAQVIDRTQFIADVHPQFWDWLRPELDAAQEKGWLK

Flanking regions ( +/- flanking 50bp)

CAGCCAACGAACCTGCAGTTTGAATGAATAAGGGTATATCTGAGGTTGTTATGTCATCAGCAGTTTCCGCACCAGTCACACCGCAGGTTATTCCGTTTTCACAATTAATCACCTTTGTCATGGAGCTGGATAAGCTCAAAAGTATTTACCGCAAAACCCGGTTACTGAATAACGAGCGTCAGGAAAATTCAGCCGAACACAGCTGGCATTTCGCTATGATGGCAATGGCATTTGCCCCTTATGTGCAGGATGCAGATATGCTGCGGATCCTGAAAATGGCGTTATTGCATGATGTGGTGGAGATTGATGCCGGTGATGTGCTGGTGTTTGATTTAGCGGCACGCGAAGCCATTGCGGAACAGGAAGTCGCGGCAGCGCATCGTATTTTCGGCTTATTGCCACAGCCGCAGGCAGATGAATTTCTGGCGCTGTGGAATGAGTATGATGCCGGAGAAACCCGTGAATCACGCATTGCAAATATGCTGGATCGCGTGATGCCGGTACTGATGAATCTGCATAATGAAGGTCAGAGCTGGGTGGAACATAATATTTCCCTGGCGCAGGTGATTGACCGGACACAGTTTATCGCTGATGTACATCCGCAATTCTGGGACTGGCTGCGCCCTGAGCTGGACGCGGCACAGGAGAAAGGCTGGCTGAAGTAATCCGGTAATTCAGCATCCGGCGTTCAATATACCCGTCATACTTCAGGATG