Homologs in group_822

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04125 FBDBKF_04125 100.0 Morganella morganii S1 yfbR 5'-deoxynucleotidase YfbR and related HD superfamily hydrolases
EHELCC_05415 EHELCC_05415 100.0 Morganella morganii S2 yfbR 5'-deoxynucleotidase YfbR and related HD superfamily hydrolases
NLDBIP_05735 NLDBIP_05735 100.0 Morganella morganii S4 yfbR 5'-deoxynucleotidase YfbR and related HD superfamily hydrolases
LHKJJB_02615 LHKJJB_02615 100.0 Morganella morganii S3 yfbR 5'-deoxynucleotidase YfbR and related HD superfamily hydrolases
F4V73_RS08565 F4V73_RS08565 88.1 Morganella psychrotolerans - HD domain-containing protein
PMI_RS09950 PMI_RS09950 59.0 Proteus mirabilis HI4320 - HD domain-containing protein

Distribution of the homologs in the orthogroup group_822

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_822

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q54FK1 6.91e-09 56 27 6 192 3 hddc2 5'-deoxynucleotidase HDDC2 Dictyostelium discoideum
Q66L17 1.1e-08 56 27 2 151 2 hddc2 5'-deoxynucleotidase HDDC2 Xenopus laevis
Q1LUI2 7.44e-07 51 26 2 131 2 hddc2 5'-deoxynucleotidase HDDC2 Danio rerio
P87242 8.01e-06 48 27 4 135 3 hdd1 5'-deoxynucleotidase hdd1 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q668Z7 0.000208 43 26 6 182 3 YPTB2590 5'-deoxynucleotidase YPTB2590 Yersinia pseudotuberculosis serotype I (strain IP32953)
A1JLF1 0.000356 43 23 4 163 3 YE1340 5'-deoxynucleotidase YE1340 Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_06090
Feature type CDS
Gene yfbR
Product 5'-deoxynucleotidase YfbR and related HD superfamily hydrolases
Location 9455 - 10060 (strand: 1)
Length 606 (nucleotides) / 201 (amino acids)

Contig

Accession ZDB_683
Length 224720 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_822
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13023 HD domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1896 Nucleotide transport and metabolism (F)
General function prediction only (R)		 FR 5'-deoxynucleotidase YfbR and related HD superfamily hydrolases

Protein Sequence

MSSVVPAQEVIPFSQLITFVMELDKLKSVYRKTRLLNNERQENSAEHSWHFAMTAMAFAPYVEDADMLRILKMALLHDVVEIDAGDVLVFDLAAREAIAEKEVAAAKRIFGLLPQPQADEFQALWNEYDAAETREARIANMIDRVMPVLMNLHNNGQSWVENNISLEQVIDRTKFIADVHPAFWAWLRAELDTAKQKGWLH

Flanking regions ( +/- flanking 50bp)

CCTGTCTCTGCGCCCGGAGGTATTCTGTATAAATCCGTATTGAGGTTGTTATGTCATCAGTTGTTCCCGCACAGGAAGTCATTCCTTTTTCTCAGTTAATCACCTTTGTTATGGAGCTGGATAAGCTCAAAAGCGTTTACCGCAAAACCCGCCTGCTGAACAATGAACGTCAGGAAAACTCCGCTGAACACAGCTGGCATTTTGCCATGACAGCAATGGCGTTTGCGCCGTATGTTGAAGATGCGGATATGCTGCGGATCCTGAAAATGGCACTGCTGCATGATGTGGTGGAAATTGACGCCGGGGACGTGCTGGTCTTTGATCTGGCCGCCCGCGAAGCGATTGCGGAAAAAGAAGTGGCTGCCGCAAAACGGATTTTCGGCCTGCTGCCGCAGCCGCAGGCGGATGAGTTTCAGGCGCTGTGGAATGAGTATGACGCCGCAGAGACCCGCGAAGCCCGTATCGCCAATATGATCGACCGCGTGATGCCGGTGCTGATGAATCTGCACAACAATGGTCAGAGCTGGGTGGAAAACAATATTTCACTGGAACAGGTAATTGACCGCACGAAATTTATTGCGGATGTGCATCCGGCATTCTGGGCGTGGTTACGCGCCGAACTGGATACCGCGAAGCAGAAAGGCTGGCTGCACTGATAAAAAAGGCCGGTTGTGTTACCACAACCGGCCTTTTTTTTATCGTTTAC