Homologs in group_822

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04125 FBDBKF_04125 59.0 Morganella morganii S1 yfbR 5'-deoxynucleotidase YfbR and related HD superfamily hydrolases
EHELCC_05415 EHELCC_05415 59.0 Morganella morganii S2 yfbR 5'-deoxynucleotidase YfbR and related HD superfamily hydrolases
NLDBIP_05735 NLDBIP_05735 59.0 Morganella morganii S4 yfbR 5'-deoxynucleotidase YfbR and related HD superfamily hydrolases
LHKJJB_02615 LHKJJB_02615 59.0 Morganella morganii S3 yfbR 5'-deoxynucleotidase YfbR and related HD superfamily hydrolases
HKOGLL_06090 HKOGLL_06090 59.0 Morganella morganii S5 yfbR 5'-deoxynucleotidase YfbR and related HD superfamily hydrolases
F4V73_RS08565 F4V73_RS08565 61.0 Morganella psychrotolerans - HD domain-containing protein

Distribution of the homologs in the orthogroup group_822

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_822

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q1LUI2 3.5e-10 60 27 3 142 2 hddc2 5'-deoxynucleotidase HDDC2 Danio rerio
Q66L17 4e-10 60 31 2 140 2 hddc2 5'-deoxynucleotidase HDDC2 Xenopus laevis
P87242 5.19e-07 51 27 4 133 3 hdd1 5'-deoxynucleotidase hdd1 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q54FK1 1.58e-06 50 25 4 166 3 hddc2 5'-deoxynucleotidase HDDC2 Dictyostelium discoideum
Q7Z4H3 0.000104 45 32 2 130 1 HDDC2 5'-deoxynucleotidase HDDC2 Homo sapiens
Q3SXD3 0.000131 44 31 2 136 1 Hddc2 5'-deoxynucleotidase HDDC2 Mus musculus
A1JLF1 0.000171 44 25 5 176 3 YE1340 5'-deoxynucleotidase YE1340 Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
P38331 0.000784 42 21 3 123 1 YBR242W 5'-deoxynucleotidase YBR242W Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
B2VIV0 0.000871 42 25 5 183 3 ETA_12010 5'-deoxynucleotidase ETA_12010 Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS09950
Feature type CDS
Gene -
Product HD domain-containing protein
Location 2156360 - 2156962 (strand: 1)
Length 603 (nucleotides) / 200 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_822
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13023 HD domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1896 Nucleotide transport and metabolism (F)
General function prediction only (R)		 FR 5'-deoxynucleotidase YfbR and related HD superfamily hydrolases

Protein Sequence

MTQQTNGAFGPFSDTINFIIELDKLKRVYRKNNVLDNSRAENTAEHSWHFAVAAMSFQPYAGDIDIGRAIQLALVHDIVEIDAGDVMVYDVAAREAIKEQEQKAARRIFSLLPAPQSEYFLNLWLEYDAAQTPESQFANILDRAMPMLMNLHNEGQSWVENNIRLEQVIARNLFIEKQWPEFWQYLYPQLLEAQKKGWLK

Flanking regions ( +/- flanking 50bp)

CCTTACTCTTTAGAAGATGAGTGATAGCACTTCCATATGAACGGATTTTTATGACACAACAAACTAATGGGGCTTTTGGCCCCTTTTCAGATACCATCAATTTTATTATTGAACTCGATAAACTCAAACGCGTTTACCGCAAAAATAATGTATTAGACAATAGCCGTGCTGAAAATACCGCTGAGCATAGTTGGCACTTTGCTGTTGCAGCAATGAGTTTTCAACCTTATGCCGGTGATATTGATATAGGTAGAGCGATCCAGCTAGCTTTAGTGCATGATATTGTCGAAATCGATGCTGGTGATGTGATGGTTTATGATGTTGCCGCTCGTGAAGCGATTAAAGAGCAAGAGCAAAAAGCAGCCAGACGTATTTTTTCGTTGTTACCTGCACCACAAAGTGAATATTTTCTTAATCTCTGGCTTGAATATGATGCAGCACAAACCCCTGAGTCACAATTTGCCAATATTTTAGATCGCGCAATGCCAATGTTAATGAATCTACATAACGAAGGGCAAAGCTGGGTTGAAAATAATATCCGTTTAGAACAAGTGATTGCACGAAATCTATTTATCGAAAAACAGTGGCCAGAATTTTGGCAATACCTCTATCCTCAATTACTAGAGGCACAGAAAAAAGGCTGGTTAAAATAATTTTTTGCTGTTCATTTGATGATGACCAAAAAAATACCGAAGGTAGATTT