Homologs in group_1647

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10940 FBDBKF_10940 79.2 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
EHELCC_05285 EHELCC_05285 79.2 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_05605 NLDBIP_05605 79.2 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_02485 LHKJJB_02485 79.2 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_15865 HKOGLL_15865 79.2 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
PMI_RS09670 PMI_RS09670 50.0 Proteus mirabilis HI4320 - AraC family transcriptional regulator

Distribution of the homologs in the orthogroup group_1647

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1647

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P26993 8.05e-100 296 56 1 251 1 exsA HTH-type transcriptional regulator ExsA Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
A1JU91 1.08e-87 265 53 2 252 3 virF Virulence regulon transcriptional activator VirF Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
P0C2V5 1.46e-87 265 53 2 252 2 virF Virulence regulon transcriptional activator VirF Yersinia enterocolitica
P28808 1.16e-86 262 53 2 252 4 lcrF Thermoregulatory protein LcrF Yersinia pestis
B1Q2A8 2.97e-11 66 35 2 101 1 nphR Transcriptional activator NphR Rhodococcus sp.
Q52620 1.24e-07 52 31 2 106 4 pqrA Probable transcription factor PqrA Proteus vulgaris
O31249 1.36e-07 55 28 2 104 4 alkR HTH-type transcriptional regulator AlkR Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
O33813 2.25e-07 54 24 0 121 4 lacR Lactose operon transcription activator Staphylococcus xylosus
P07642 5.76e-07 53 27 3 136 3 araC Arabinose operon regulatory protein Dickeya chrysanthemi
P45008 6.42e-07 53 27 0 87 4 HI_1052 Uncharacterized HTH-type transcriptional regulator HI_1052 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A7ZUB7 9.29e-07 52 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O139:H28 (strain E24377A / ETEC)
Q05587 9.92e-07 52 26 0 92 1 pocR Regulatory protein PocR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q9HTI4 1.33e-06 52 30 0 93 1 gbdR HTH-type transcriptional regulator GbdR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
A0A0H2ZIC3 1.33e-06 52 30 0 93 1 gbdR HTH-type transcriptional regulator GbdR Pseudomonas aeruginosa (strain UCBPP-PA14)
B6I4P8 1.56e-06 52 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain SE11)
Q83PE0 1.76e-06 51 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Shigella flexneri
Q0SZ95 1.76e-06 51 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Shigella flexneri serotype 5b (strain 8401)
Q1R414 1.88e-06 51 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain UTI89 / UPEC)
B7NFK3 1.88e-06 51 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
A1AI82 1.88e-06 51 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O1:K1 / APEC
B7NUA1 1.88e-06 51 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O7:K1 (strain IAI39 / ExPEC)
B7MI37 1.88e-06 51 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O45:K1 (strain S88 / ExPEC)
P77379 1.97e-06 51 28 0 85 1 rclR RCS-specific HTH-type transcriptional activator RclR Escherichia coli (strain K12)
B5YZ43 2e-06 51 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q8X897 2e-06 51 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O157:H7
B1LMU6 2.04e-06 51 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain SMS-3-5 / SECEC)
Q31U84 2.2e-06 51 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Shigella boydii serotype 4 (strain Sb227)
P09377 2.2e-06 51 23 0 95 1 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain K12)
B1IVH3 2.2e-06 51 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
Q0TAF8 2.2e-06 51 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A8A709 2.2e-06 51 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O9:H4 (strain HS)
B1XB72 2.2e-06 51 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain K12 / DH10B)
C5A073 2.2e-06 51 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain K12 / MC4100 / BW2952)
B7M6V7 2.2e-06 51 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O8 (strain IAI1)
B7L9G1 2.2e-06 51 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain 55989 / EAEC)
B7UNM6 2.2e-06 51 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O127:H6 (strain E2348/69 / EPEC)
Q46855 2.29e-06 51 26 0 111 4 yqhC Uncharacterized HTH-type transcriptional regulator YqhC Escherichia coli (strain K12)
Q3YV71 2.3e-06 51 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Shigella sonnei (strain Ss046)
B7N2P7 2.35e-06 51 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O81 (strain ED1a)
Q32A70 2.37e-06 51 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Shigella dysenteriae serotype 1 (strain Sd197)
Q8CXW5 2.46e-06 51 23 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
O31522 3e-06 52 29 2 113 2 yesS HTH-type transcriptional regulator YesS Bacillus subtilis (strain 168)
Q9WW32 4.46e-06 50 23 4 150 1 mtrA HTH-type transcriptional regulator MtrA Neisseria gonorrhoeae
Q9HTH5 5.19e-06 50 29 0 104 1 cdhR HTH-type transcriptional regulator CdhR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q65Q31 5.79e-06 50 22 0 92 3 rhaS HTH-type transcriptional activator RhaS Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
B5XZ49 6.73e-06 50 22 1 114 3 rhaS HTH-type transcriptional activator RhaS Klebsiella pneumoniae (strain 342)
A8AL27 6.73e-06 50 20 5 224 3 rhaS HTH-type transcriptional activator RhaS Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
P0A9E2 6.96e-06 47 30 0 81 1 soxS Regulatory protein SoxS Escherichia coli (strain K12)
P0A9E3 6.96e-06 47 30 0 81 3 soxS Regulatory protein SoxS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9E4 6.96e-06 47 30 0 81 3 soxS Regulatory protein SoxS Escherichia coli O157:H7
P96662 7.41e-06 50 29 0 96 4 ydeE Uncharacterized HTH-type transcriptional regulator YdeE Bacillus subtilis (strain 168)
A6TGA9 7.51e-06 49 22 1 114 3 rhaS HTH-type transcriptional activator RhaS Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
T2KMF4 8.31e-06 50 33 0 81 3 BN863_21930 Histidine kinase P4 Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1)
Q56143 1.01e-05 47 30 0 81 3 soxS Regulatory protein SoxS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
B2TVP7 1.25e-05 49 22 0 95 3 rhaS HTH-type transcriptional activator RhaS Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
P17410 1.55e-05 48 40 0 59 1 chbR HTH-type transcriptional regulator ChbR Escherichia coli (strain K12)
Q84BZ4 1.61e-05 48 27 1 96 4 andR Anthranilate 1,2-dioxygenase regulatory protein Burkholderia cepacia
G3XCU2 2.14e-05 48 29 0 93 4 argR HTH-type transcriptional regulator ArgR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
H9L484 4.12e-05 45 26 0 83 1 ramA Transcriptional regulator RamA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q65Q30 4.86e-05 47 23 1 127 3 rhaR HTH-type transcriptional activator RhaR Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
A4WG91 5.09e-05 47 22 0 96 3 rhaS HTH-type transcriptional activator RhaS Enterobacter sp. (strain 638)
P40883 5.15e-05 47 27 1 81 2 pchR Regulatory protein PchR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q48413 6.65e-05 44 25 0 93 1 ramA Transcriptional activator RamA Klebsiella pneumoniae
A0A0H3GPK2 6.65e-05 44 25 0 93 1 ramA Transcriptional regulator RamA Klebsiella pneumoniae subsp. pneumoniae (strain HS11286)
Q00753 6.82e-05 47 26 0 96 4 msmR Msm operon regulatory protein Streptococcus mutans serotype c (strain ATCC 700610 / UA159)
P43464 6.94e-05 47 25 8 226 4 aggR Transcriptional activator AggR Escherichia coli
P0A2T3 7.44e-05 46 28 1 96 3 virF Virulence regulon transcriptional activator VirF Shigella sonnei
P0A2T1 7.44e-05 46 28 1 96 2 virF Virulence regulon transcriptional activator VirF Shigella flexneri
P0A2T2 7.44e-05 46 28 1 96 3 virF Virulence regulon transcriptional activator VirF Shigella dysenteriae
B4TPQ9 0.000113 46 20 0 96 3 rhaS HTH-type transcriptional activator RhaS Salmonella schwarzengrund (strain CVM19633)
B7LVD8 0.000126 46 22 0 95 3 rhaS HTH-type transcriptional activator RhaS Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
B5FPP5 0.000147 45 20 0 96 3 rhaS HTH-type transcriptional activator RhaS Salmonella dublin (strain CT_02021853)
B5BJG8 0.00016 45 20 0 98 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi A (strain AKU_12601)
Q5PKG2 0.00016 45 20 0 98 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B4TBY3 0.000166 45 20 0 98 3 rhaS HTH-type transcriptional activator RhaS Salmonella heidelberg (strain SL476)
B5F0M9 0.000169 45 20 0 98 3 rhaS HTH-type transcriptional activator RhaS Salmonella agona (strain SL483)
P0A2S9 0.000172 45 20 0 98 3 rhaS HTH-type transcriptional activator RhaS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2T0 0.000172 45 20 0 98 3 rhaS HTH-type transcriptional activator RhaS Salmonella typhi
C0Q3L4 0.000172 45 20 0 98 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi C (strain RKS4594)
A9MZC8 0.000172 45 20 0 98 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
B4SZZ3 0.000172 45 20 0 98 3 rhaS HTH-type transcriptional activator RhaS Salmonella newport (strain SL254)
B5RFC3 0.000172 45 20 0 98 3 rhaS HTH-type transcriptional activator RhaS Salmonella gallinarum (strain 287/91 / NCTC 13346)
B5QWY4 0.000172 45 20 0 98 3 rhaS HTH-type transcriptional activator RhaS Salmonella enteritidis PT4 (strain P125109)
Q57HG8 0.00018 45 20 0 98 3 rhaS HTH-type transcriptional activator RhaS Salmonella choleraesuis (strain SC-B67)
A9MI64 0.000208 45 20 0 98 3 rhaS HTH-type transcriptional activator RhaS Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
P43463 0.000293 43 24 0 95 4 aarP HTH-type transcriptional activator AarP Providencia stuartii
A9QYR8 0.000306 45 24 1 108 3 rhaS HTH-type transcriptional activator RhaS Yersinia pestis bv. Antiqua (strain Angola)
P77402 0.000308 45 26 0 92 4 ydiP Uncharacterized HTH-type transcriptional regulator YdiP Escherichia coli (strain K12)
P0A9E0 0.000396 44 22 2 162 1 araC Arabinose operon regulatory protein Escherichia coli (strain K12)
P0A9E1 0.000396 44 22 2 162 3 araC Arabinose operon regulatory protein Escherichia coli O157:H7
Q8FCI6 0.000404 44 27 1 94 3 gadX HTH-type transcriptional regulator GadX Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
B1JNC5 0.000417 44 23 0 97 3 rhaS HTH-type transcriptional activator RhaS Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
A4TRS8 0.000417 44 23 0 97 3 rhaS HTH-type transcriptional activator RhaS Yersinia pestis (strain Pestoides F)
B2K1W5 0.000417 44 23 0 97 3 rhaS HTH-type transcriptional activator RhaS Yersinia pseudotuberculosis serotype IB (strain PB1/+)
A7FN80 0.000417 44 23 0 97 3 rhaS HTH-type transcriptional activator RhaS Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
P0ACI2 0.000418 44 32 0 83 3 rob Right origin-binding protein Shigella flexneri
P0ACI0 0.000418 44 32 0 83 1 rob Right origin-binding protein Escherichia coli (strain K12)
P0ACI1 0.000418 44 32 0 83 3 rob Right origin-binding protein Escherichia coli O157:H7
Q66FF2 0.000433 44 23 0 97 3 rhaS HTH-type transcriptional activator RhaS Yersinia pseudotuberculosis serotype I (strain IP32953)
Q9EYV5 0.00045 44 27 1 94 3 gadX HTH-type transcriptional regulator GadX Escherichia coli O127:H6 (strain E2348/69 / EPEC)
Q8FQS2 0.000493 44 28 1 100 3 ripA HTH-type transcriptional regulator RipA Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
Q05092 0.000535 43 28 1 103 4 xylS2 XylDLEGF operon transcriptional activator 2 Pseudomonas putida
P0ACH8 0.00054 44 27 0 92 1 melR Melibiose operon regulatory protein Escherichia coli (strain K12)
P0ACH9 0.00054 44 27 0 92 3 melR Melibiose operon regulatory protein Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P28816 0.000575 42 30 0 83 1 tetD Transposon Tn10 TetD protein Escherichia coli
Q32A71 0.000626 43 24 0 97 3 rhaR HTH-type transcriptional activator RhaR Shigella dysenteriae serotype 1 (strain Sd197)
Q8ZJU7 0.000714 43 32 0 83 2 rob Transcriptional regulator Rob Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q02458 0.000757 43 20 2 125 1 ureR Urease operon transcriptional activator Proteus mirabilis (strain HI4320)
Q83PD9 0.000869 43 24 0 97 3 rhaR HTH-type transcriptional activator RhaR Shigella flexneri
Q0SZ96 0.000869 43 24 0 97 3 rhaR HTH-type transcriptional activator RhaR Shigella flexneri serotype 5b (strain 8401)
Q31U83 0.000885 43 24 0 97 3 rhaR HTH-type transcriptional activator RhaR Shigella boydii serotype 4 (strain Sb227)
Q1R413 0.000885 43 24 0 97 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli (strain UTI89 / UPEC)
Q8FBD7 0.000885 43 24 0 97 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TAF7 0.000885 43 24 0 97 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A1AI83 0.000885 43 24 0 97 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O1:K1 / APEC
Q8X7B3 0.000885 43 24 0 97 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O157:H7
A7ZUB8 0.000885 43 24 0 97 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O139:H28 (strain E24377A / ETEC)
P09378 0.001 43 24 0 97 1 rhaR HTH-type transcriptional activator RhaR Escherichia coli (strain K12)
A8A710 0.001 43 24 0 97 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O9:H4 (strain HS)
C5A074 0.001 43 24 0 97 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli (strain K12 / MC4100 / BW2952)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS08355
Feature type CDS
Gene -
Product AraC family transcriptional regulator
Location 1730493 - 1731317 (strand: 1)
Length 825 (nucleotides) / 274 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1647
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF12833 Helix-turn-helix domain
PF22200 ExsA N-terminal regulatory domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2207 Transcription (K) K AraC-type DNA-binding domain and AraC-containing proteins

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K20968 AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA Biofilm formation - Pseudomonas aeruginosa -

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG038332 Type III secretion system transcriptional regulator VF0479 Effector delivery system

Protein Sequence

MNLCTLSDSNTISIQPVIIDSSEFNIIEQQEKGLYILMSGSMKWQDCTNSFTLNKNEVIFSNQGSYAYQHISGEICLLWIPLSSDFLRDFLQRFSDTLSHLQRITEPTSGIICFSHSDMMEDSITGLYNAHQNNTPAALMKLKLEELLLIIALSEQGIRLMSVLRQLSNRQAERLQTFMEKNYLNDWKLNEFSKEFGMGLTTFKELFGSVYGTSPRAWISERRLLFSHQLLLNTQMSIVDISMEAGFSSQSYFTQSYRKRFGFTPSKARSSHVI

Flanking regions ( +/- flanking 50bp)

AATCTGTTCCTCTTATTTTATTGCACAGCATTGTTCACTCAGAGATGCCTATGAACTTATGTACATTATCCGATAGTAATACTATCAGTATACAGCCTGTTATTATTGATTCATCAGAATTCAACATTATTGAACAACAGGAAAAAGGGTTGTATATCCTTATGTCCGGATCAATGAAATGGCAGGATTGCACTAATTCCTTCACGTTGAATAAGAATGAAGTTATCTTCTCCAATCAGGGAAGCTATGCTTATCAACATATATCCGGCGAGATTTGTTTATTATGGATACCTCTCAGCAGTGATTTCTTACGCGATTTTCTTCAGCGGTTTTCTGATACTCTGAGTCATTTACAACGGATTACAGAACCAACATCTGGTATTATTTGTTTTTCACATTCAGATATGATGGAAGACAGTATTACAGGATTGTATAATGCTCATCAGAATAATACGCCCGCTGCTCTGATGAAATTAAAGCTGGAAGAACTATTACTTATTATAGCGCTTAGTGAACAAGGAATACGGTTAATGTCCGTATTACGCCAATTAAGTAATCGCCAGGCTGAACGTTTACAGACATTTATGGAAAAGAATTACCTTAATGACTGGAAATTAAATGAGTTTTCCAAAGAATTCGGGATGGGACTGACAACATTTAAAGAATTATTCGGTTCCGTTTACGGTACATCTCCCCGCGCCTGGATAAGCGAGCGCAGGCTTCTTTTTTCTCATCAGTTATTGCTTAACACGCAGATGAGCATTGTAGATATTTCAATGGAAGCCGGATTTTCAAGCCAATCCTATTTTACACAAAGCTATCGCAAGCGCTTCGGGTTTACACCAAGTAAAGCCAGGTCCAGTCATGTAATATGACGAATAGTGATAAAAAGGTAAAATAAAAATCACACTAATACAGGCTGAGT