Homologs in group_316

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09310 FBDBKF_09310 36.5 Morganella morganii S1 escR EscR/YscR/HrcR family type III secretion system export apparatus protein
EHELCC_10100 EHELCC_10100 36.5 Morganella morganii S2 escR EscR/YscR/HrcR family type III secretion system export apparatus protein
NLDBIP_10445 NLDBIP_10445 36.5 Morganella morganii S4 escR EscR/YscR/HrcR family type III secretion system export apparatus protein
LHKJJB_10910 LHKJJB_10910 36.5 Morganella morganii S3 escR EscR/YscR/HrcR family type III secretion system export apparatus protein
HKOGLL_13970 HKOGLL_13970 36.5 Morganella morganii S5 escR EscR/YscR/HrcR family type III secretion system export apparatus protein
F4V73_RS10655 F4V73_RS10655 37.9 Morganella psychrotolerans - EscR/YscR/HrcR family type III secretion system export apparatus protein
PMI_RS13245 PMI_RS13245 41.1 Proteus mirabilis HI4320 - EscR/YscR/HrcR family type III secretion system export apparatus protein

Distribution of the homologs in the orthogroup group_316

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_316

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P74890 1.59e-65 204 48 1 215 2 yscR Virulence protein YscR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P69981 7.81e-58 184 45 1 214 3 yscR Yop proteins translocation protein R Yersinia pseudotuberculosis serotype I (strain IP32953)
P69980 7.81e-58 184 45 1 214 3 yscR Yop proteins translocation protein R Yersinia pestis
Q46646 2.97e-51 168 40 2 215 3 hrcR Harpin secretion protein HrcR Erwinia amylovora
Q56023 9.85e-49 161 42 3 219 3 spaP Surface presentation of antigens protein SpaP Salmonella typhi
P0A1L4 1.65e-48 160 43 5 219 3 spaP Surface presentation of antigens protein SpaP Shigella sonnei
P0A1L3 1.65e-48 160 43 5 219 1 spaP Surface presentation of antigens protein SpaP Shigella flexneri
P40700 4.79e-48 160 42 3 219 1 spaP Surface presentation of antigens protein SpaP Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P55720 3.04e-47 157 43 1 192 3 NGR_a00610 Probable translocation protein y4yL Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P37828 1.42e-45 153 36 1 207 3 None Pathogenicity-related ORF2 Xanthomonas campestris pv. glycines
Q60236 9.85e-45 151 41 1 202 3 hrpW Harpin secretion protein HrpW Pseudomonas syringae pv. syringae
Q52488 2.24e-43 147 35 2 209 3 hrcR Hypersensitivity response secretion protein HrcR Ralstonia nicotianae (strain ATCC BAA-1114 / GMI1000)
O85133 8.53e-41 143 42 2 207 3 fliP Flagellar biosynthetic protein FliP Cereibacter sphaeroides
Q47856 1.53e-40 140 38 2 214 3 hrcR Harpin secretion protein HrcR Pantoea agglomerans pv. gypsophilae
Q89AZ2 1.03e-37 137 38 5 215 3 fliP Flagellar biosynthetic protein FliP Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
O67750 4.33e-37 132 35 5 219 3 fliP Flagellar biosynthetic protein FliP Aquifex aeolicus (strain VF5)
P0AC05 8.11e-37 132 35 3 213 3 fliP Flagellar biosynthetic protein FliP Escherichia coli (strain K12)
P0AC06 8.11e-37 132 35 3 213 3 fliP Flagellar biosynthetic protein FliP Escherichia coli O157:H7
Q51468 1.69e-36 131 37 4 201 3 fliP Flagellar biosynthetic protein FliP Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P57184 6.03e-36 132 36 2 211 3 fliP Flagellar biosynthetic protein FliP Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8KA37 1.23e-35 132 36 2 209 3 fliP Flagellar biosynthetic protein FliP Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q45980 1.62e-35 129 35 4 211 3 fliP Flagellar biosynthetic protein FliP Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15)
P54700 4.98e-35 127 35 3 201 1 fliP Flagellar biosynthetic protein FliP Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P35528 1.36e-34 125 34 2 212 3 fliP Flagellar biosynthetic protein FliP Bacillus subtilis (strain 168)
P37827 1.42e-34 126 36 3 205 3 fliP Flagellar biosynthetic protein FliP Rhizobium meliloti (strain 1021)
P34200 3.13e-34 125 37 4 207 3 fliP Flagellar biosynthetic protein FliP Pectobacterium carotovorum subsp. carotovorum
Q44344 4.87e-34 124 37 4 206 3 fliP Flagellar biosynthetic protein FliP Agrobacterium fabrum (strain C58 / ATCC 33970)
P74930 9.66e-30 114 34 3 196 3 fliP Flagellar biosynthetic protein FliP Treponema pallidum (strain Nichols)
Q9X5A6 2.73e-27 107 32 4 216 3 fliP Flagellar biosynthetic protein FliP Treponema denticola (strain ATCC 35405 / DSM 14222 / CIP 103919 / JCM 8153 / KCTC 15104)
Q44763 1.28e-25 103 32 3 198 3 fliP Flagellar biosynthetic protein FliP Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS08335
Feature type CDS
Gene sctR
Product type III secretion system export apparatus subunit SctR
Location 1727295 - 1727942 (strand: 1)
Length 648 (nucleotides) / 215 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_316
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF00813 FliP family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4790 Intracellular trafficking, secretion, and vesicular transport (U) U Type III secretory pathway, EscR/YscR component

Protein Sequence

MNLSDPLFLIALLAFLSFIPVIIVTGTAFIKIGIVFSLLRNAIGIQQIPSNLTMHSFALILTLFVMGPTLFDIKEIIDTEKLSGDPVYLADTVMRAGDIYSRFLIKNTAPESRQFFQQTIQTIWPEKYHPAQDNPPFYILLPSFTLSELISAFKIGFLLYLPFLAIDFIISNILLAMGMMMVSPMTISLPLKLLLFIMINGWEKLIRALLFSYHF

Flanking regions ( +/- flanking 50bp)

GTCCAGATAAAAGAATTTACCGGCTTACAGGCCGCTCCCGGCACCGGCTCATGAATTTATCTGATCCACTATTTTTGATTGCTCTTCTGGCATTTCTTTCTTTTATACCTGTTATTATCGTGACCGGTACTGCCTTTATAAAAATAGGGATTGTATTCTCACTTCTTCGTAATGCGATTGGTATTCAGCAAATACCCTCTAACCTCACCATGCATTCTTTTGCGCTGATCCTGACATTATTTGTCATGGGGCCGACACTGTTTGATATTAAAGAAATTATAGATACTGAAAAACTATCCGGTGACCCGGTTTACCTTGCAGACACCGTTATGCGGGCAGGTGACATATACAGCCGGTTCTTAATAAAAAACACAGCACCGGAGAGCCGCCAGTTTTTTCAGCAAACCATTCAGACTATCTGGCCGGAAAAATATCATCCTGCGCAGGATAATCCGCCATTCTATATTCTGTTACCCTCATTTACACTCAGTGAGCTCATCAGTGCATTTAAAATCGGTTTCTTACTGTATCTGCCATTTCTCGCCATCGATTTTATTATCTCAAATATTTTGCTGGCGATGGGAATGATGATGGTATCTCCGATGACAATATCCCTCCCCTTAAAATTACTCTTATTTATAATGATTAATGGCTGGGAAAAATTAATCCGTGCTCTGCTTTTCAGCTATCACTTCTGATGATGGATCCACAACTGCTTTTCTACGCCGGAAAAATGCTCTGGCTGATT