Homologs in group_316

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09310 FBDBKF_09310 61.0 Morganella morganii S1 escR EscR/YscR/HrcR family type III secretion system export apparatus protein
EHELCC_10100 EHELCC_10100 61.0 Morganella morganii S2 escR EscR/YscR/HrcR family type III secretion system export apparatus protein
NLDBIP_10445 NLDBIP_10445 61.0 Morganella morganii S4 escR EscR/YscR/HrcR family type III secretion system export apparatus protein
LHKJJB_10910 LHKJJB_10910 61.0 Morganella morganii S3 escR EscR/YscR/HrcR family type III secretion system export apparatus protein
HKOGLL_13970 HKOGLL_13970 61.0 Morganella morganii S5 escR EscR/YscR/HrcR family type III secretion system export apparatus protein
F4V73_RS08335 F4V73_RS08335 41.1 Morganella psychrotolerans sctR type III secretion system export apparatus subunit SctR
F4V73_RS10655 F4V73_RS10655 62.9 Morganella psychrotolerans - EscR/YscR/HrcR family type III secretion system export apparatus protein

Distribution of the homologs in the orthogroup group_316

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_316

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A1L4 4.24e-81 244 58 2 218 3 spaP Surface presentation of antigens protein SpaP Shigella sonnei
P0A1L3 4.24e-81 244 58 2 218 1 spaP Surface presentation of antigens protein SpaP Shigella flexneri
Q56023 5.33e-75 229 56 2 222 3 spaP Surface presentation of antigens protein SpaP Salmonella typhi
P40700 5.69e-75 228 56 2 222 1 spaP Surface presentation of antigens protein SpaP Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q46646 3.2e-52 170 44 2 206 3 hrcR Harpin secretion protein HrcR Erwinia amylovora
P69981 3.36e-50 165 42 2 190 3 yscR Yop proteins translocation protein R Yersinia pseudotuberculosis serotype I (strain IP32953)
P69980 3.36e-50 165 42 2 190 3 yscR Yop proteins translocation protein R Yersinia pestis
Q60236 2.79e-44 150 42 2 208 3 hrpW Harpin secretion protein HrpW Pseudomonas syringae pv. syringae
Q47856 2.62e-42 145 43 4 207 3 hrcR Harpin secretion protein HrcR Pantoea agglomerans pv. gypsophilae
P74890 2.7e-42 145 37 1 211 2 yscR Virulence protein YscR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q52488 1.12e-41 143 38 4 215 3 hrcR Hypersensitivity response secretion protein HrcR Ralstonia nicotianae (strain ATCC BAA-1114 / GMI1000)
P37828 1.32e-40 140 37 0 206 3 None Pathogenicity-related ORF2 Xanthomonas campestris pv. glycines
P55720 8.26e-39 136 36 0 192 3 NGR_a00610 Probable translocation protein y4yL Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q45980 1.89e-37 134 36 4 214 3 fliP Flagellar biosynthetic protein FliP Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15)
P35528 4.18e-37 132 34 4 214 3 fliP Flagellar biosynthetic protein FliP Bacillus subtilis (strain 168)
Q9X5A6 5.52e-34 125 35 6 217 3 fliP Flagellar biosynthetic protein FliP Treponema denticola (strain ATCC 35405 / DSM 14222 / CIP 103919 / JCM 8153 / KCTC 15104)
P74930 2.97e-33 123 37 5 217 3 fliP Flagellar biosynthetic protein FliP Treponema pallidum (strain Nichols)
O85133 2.43e-32 122 36 4 211 3 fliP Flagellar biosynthetic protein FliP Cereibacter sphaeroides
P37827 3.22e-32 120 32 5 207 3 fliP Flagellar biosynthetic protein FliP Rhizobium meliloti (strain 1021)
Q51468 3.75e-32 120 34 3 209 3 fliP Flagellar biosynthetic protein FliP Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P0AC05 2.52e-31 117 35 5 205 3 fliP Flagellar biosynthetic protein FliP Escherichia coli (strain K12)
P0AC06 2.52e-31 117 35 5 205 3 fliP Flagellar biosynthetic protein FliP Escherichia coli O157:H7
P54700 3.03e-31 117 34 5 216 1 fliP Flagellar biosynthetic protein FliP Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
O67750 1.34e-30 115 31 4 220 3 fliP Flagellar biosynthetic protein FliP Aquifex aeolicus (strain VF5)
P57184 1.17e-29 116 36 5 210 3 fliP Flagellar biosynthetic protein FliP Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q44344 1.43e-28 110 30 6 210 3 fliP Flagellar biosynthetic protein FliP Agrobacterium fabrum (strain C58 / ATCC 33970)
Q44763 2.84e-28 110 33 6 206 3 fliP Flagellar biosynthetic protein FliP Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
P34200 4.12e-28 109 35 4 211 3 fliP Flagellar biosynthetic protein FliP Pectobacterium carotovorum subsp. carotovorum
Q8KA37 1.44e-27 110 34 4 211 3 fliP Flagellar biosynthetic protein FliP Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q89AZ2 1.95e-26 107 32 5 211 3 fliP Flagellar biosynthetic protein FliP Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS13245
Feature type CDS
Gene -
Product EscR/YscR/HrcR family type III secretion system export apparatus protein
Location 2939875 - 2940534 (strand: -1)
Length 660 (nucleotides) / 219 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_316
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF00813 FliP family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4790 Intracellular trafficking, secretion, and vesicular transport (U) U Type III secretory pathway, EscR/YscR component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K22507 type III secretion system export apparatus protein - -

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG003519 EscR/YscR/HrcR family type III secretion system export apparatus protein VF1025 Effector delivery system

Protein Sequence

MESSTQLILILALATLAPFIIAAGTCYLKFSIVLVMTRNALGVQQVPSNMVLNAIALMMALFVMTPITKNICYYIIENKVDMSSPDAIESFSNEALGDYKKYLYHYSDPDLLAFFEQAQENRPNSDGDKENIENSLLSLLPAYALSEIKSAFIIGFYLYLPFIVIDLVVSCILLALGMMMMSPITLSVPLKLILFIAMDGWGLLSKGLINQYLDLMAVN

Flanking regions ( +/- flanking 50bp)

ATATGTTAGCGGTAGAAATTAATAAATTATCTATAAAATGTGAATAACATATGGAAAGCTCAACACAATTAATCTTGATCCTAGCTCTTGCCACATTGGCTCCTTTTATTATTGCTGCAGGAACTTGTTATTTAAAGTTTTCTATCGTTTTAGTCATGACTCGTAATGCATTAGGTGTACAGCAAGTTCCTTCTAATATGGTACTTAATGCTATCGCTTTAATGATGGCTCTTTTTGTTATGACACCAATTACTAAAAACATTTGTTACTATATTATTGAAAATAAAGTGGATATGTCATCTCCAGATGCGATTGAGTCATTTTCAAATGAGGCGTTAGGCGATTATAAAAAATACCTTTATCATTACTCAGATCCTGATTTATTAGCTTTTTTTGAACAAGCGCAAGAGAATAGACCGAATAGTGATGGTGATAAAGAAAACATAGAAAATTCACTCTTATCATTATTACCGGCATATGCACTTAGTGAGATAAAATCTGCTTTTATTATAGGTTTCTATCTTTATTTGCCTTTTATTGTTATTGACTTAGTTGTCTCATGCATTTTATTAGCATTAGGTATGATGATGATGAGCCCTATTACATTATCTGTACCTTTAAAACTTATTTTATTTATCGCTATGGATGGTTGGGGACTGTTATCTAAGGGACTCATTAATCAATATCTTGATTTGATGGCGGTGAACTAGTGGATATGGTTTATGCGGCTAATAAAGCTATTTATTTGATTATATTGCTT