COG4790


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4790, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Type III secretory pathway, EscR/YscR component
Function(s) descr. Intracellular trafficking, secretion, and vesicular transport (U)

Occurence in the database

COG4790 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_316 FBDBKF_09310 93768 94427 -1 escR EscR/YscR/HrcR family type III secretion system export apparatus protein Morganella morganii S1
1 group_316 EHELCC_10100 51677 52336 1 escR EscR/YscR/HrcR family type III secretion system export apparatus protein Morganella morganii S2
2 group_316 NLDBIP_10445 29948 30607 1 escR EscR/YscR/HrcR family type III secretion system export apparatus protein Morganella morganii S4
3 group_316 LHKJJB_10910 160921 161580 -1 escR EscR/YscR/HrcR family type III secretion system export apparatus protein Morganella morganii S3
4 group_316 HKOGLL_13970 94222 94881 -1 escR EscR/YscR/HrcR family type III secretion system export apparatus protein Morganella morganii S5
5 group_316 F4V73_RS08335 1727295 1727942 1 sctR type III secretion system export apparatus subunit SctR Morganella psychrotolerans
6 group_316 F4V73_RS10655 261042 261701 1 EscR/YscR/HrcR family type III secretion system export apparatus protein Morganella psychrotolerans
7 group_316 PMI_RS13245 2939875 2940534 -1 EscR/YscR/HrcR family type III secretion system export apparatus protein Proteus mirabilis HI4320